library(clusterProfiler)
## 
## clusterProfiler v4.12.2 Learn more at https://yulab-smu.top/contribution-knowledge-mining/
## 
## Please cite:
## 
## S Xu, E Hu, Y Cai, Z Xie, X Luo, L Zhan, W Tang, Q Wang, B Liu, R Wang,
## W Xie, T Wu, L Xie, G Yu. Using clusterProfiler to characterize
## multiomics data. Nature Protocols. 2024, doi:10.1038/s41596-024-01020-z
## 
## Attaching package: 'clusterProfiler'
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library(org.Hs.eg.db)
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##     tapply, union, unique, unsplit, which.max, which.min
## Loading required package: Biobase
## Welcome to Bioconductor
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##     Vignettes contain introductory material; view with
##     'browseVignettes()'. To cite Bioconductor, see
##     'citation("Biobase")', and for packages 'citation("pkgname")'.
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library(ggplot2)

0. Loading of Results

A. Converted Genes of Selected Features

For FABIA and MOFA, we are only retaining the genes from features selected in the 10-bicluster/factor form, because biclusters/factors can be similar across different number of biclusters.

genes.glmnet = readRDS("data/sel_features/gene_converted/genes_glmnet.rds")
genes.glmnet.cox.1se = readRDS("data/sel_features/gene_converted/genes_glmnet_cox_1se.rds")
genes.squeezy = readRDS("data/sel_features/gene_converted/genes_squeezy.rds")
genes.globaltest = readRDS("data/sel_features/gene_converted/genes_globaltest.rds")

genes.fabia.bic = readRDS("data/sel_features/gene_converted/genes_fabia_extracted_by_bic.rds")
genes.mofa.bic = readRDS("data/sel_features/gene_converted/genes_mofa_extracted_by_bic.rds")
genes.mfa = readRDS("data/sel_features/gene_converted/genes_mfa.rds")
genes.fabia20.superbi = readRDS("data/sel_features/gene_converted/genes_superbiclust.fabia.rds")
genes.fabiamofa.superbi = readRDS("data/sel_features/gene_converted/genes_superbiclust.fabia_mofa.rds")

#For ggm, only those selected by the maximum possible FDRcut (named ".min" for the smallest 1e-n)). are selected.
genes.ggm = readRDS("data/sel_features/gene_converted/genes_ggm.rds")[c(-3, -5, -7, -12, -13, -16, -17, -20, -21)]

genes.all = readRDS("data/derived/unique_gene_names.rds")

1. Merge all gene lists of interest for the same method into a single list.

merge.all.gene.list = function(genelist, print.genes = T, print.count = T){
  out = c()
  for (i in 1:length(genelist)) {
    out = c(out, genelist[[i]])
  }
  out.u = unique(out)
  if (print.genes) {
    print(out.u)
  }
  if (print.count) {
    print(paste(length(out.u), "unique genes selected."))
  }
  out.u
}
geneNames = list("glmnet" = merge.all.gene.list(genes.glmnet),
                 "glmnet.cox" = merge.all.gene.list(genes.glmnet.cox.1se),
                 "squeezy" = merge.all.gene.list(genes.squeezy),
                 "globaltest" = merge.all.gene.list(genes.globaltest),
                 
                 "fabia.10" = merge.all.gene.list(genes.fabia.bic),
                 "mofa.10" = merge.all.gene.list(genes.mofa.bic),
                 "mfa" = merge.all.gene.list(genes.mfa),
                 "fabia.20.superbiclust" = merge.all.gene.list(genes.fabia20.superbi),
                 "fabia.10_mofa.10.superbiclust" = merge.all.gene.list(genes.fabiamofa.superbi),
                 
                 "ggm" = merge.all.gene.list(genes.ggm),
                 
                 "all.ACC" = genes.all
            )
##  [1] "NOTCH1"  "ERBB2"   "NF2"     "KRAS"    "CCND1"   "AKT1"    "BCL2L1" 
##  [8] "AR"      "FASN"    "RB1"     "PIK3R1"  "XIAP"    "CHEK1"   "IGF1R"  
## [15] "SRSF1"   "TUBA1B"  "CDK1"    "YBX1"    "BECN1"   "ERBB3"   "FOXO3"  
## [22] "ACACA"   "E2F1"    "MYC"     "BCL2L11" "RAF1"    "XBP1"    "AKT3"   
## [29] "EEF2"    "EIF4G1"  "GSK3B"   "MSH6"    "ITGA2"   "KDR"     "MRE11A" 
## [36] "ASNS"    "CDKN1A"  "PEA15"   "MAPK1"   "STK11"   "ADAR"    "MAPK3"  
## [43] "ACVRL1"  "TSC2"    "JUN"     "RAB11B"  "EEF2K"   "DVL3"    "PRKAA1" 
## [50] "FOXM1"   "YWHAB"   "BAX"     "CASP9"   "CHGA"    "PDK1"    "TFRC"   
## [57] "TP53"    "CTNNB1"  "MACC1"   "YAP1"    "CDH2"    "ATM"     "BIRC2"  
## [64] "MAPK9"   "PCNA"    "SMAD4"   "ETS1"    "NRG1"    "NOTCH3"  "PGR"    
## [71] "ANXA1"   "SNAI2"   "SQSTM1"  "BCL2"    "AXL"     "BAK1"    "CASP3"  
## [78] "YWHAZ"   "STAT3"   "PARP1"   "PRDX1"   "PIK3CA"  "PRKCA"   "TGM2"   
## [85] "MYH9"    "IRS1"    "TYMS"    "ANXA7"   "CLDN7"   "CTNNA1"  "RPS6"   
## [92] "NDRG1"   "PECAM1"  "SETD2"  
## [1] "94 unique genes selected."
##  [1] "MRE11A" "AKT1"   "RAD51"  "MAPK9"  "MAPK3"  "STMN1"  "CHEK1"  "CDK1"  
##  [9] "EEF2K"  "TYMS"   "FOXM1"  "XIAP"   "PREX1"  "RET"    "TFRC"   "CLDN7" 
## [17] "ANXA1"  "PRKCD"  "WWTR1" 
## [1] "19 unique genes selected."
## [1] "FN1"   "G6PD"  "FASN"  "MSH6"  "TFRC"  "PDCD4"
## [1] "6 unique genes selected."
##  [1] "RB1"     "XIAP"    "ETS1"    "MAPK8"   "ARID1A"  "BID"     "CDKN1A" 
##  [8] "MYC"     "VHL"     "CCND1"   "PIK3R1"  "CHEK1"   "IGF1R"   "SRSF1"  
## [15] "TUBA1B"  "ERBB3"   "FOXO3"   "ACACA"   "BCL2"    "ERBB2"   "AXL"    
## [22] "BAK1"    "CASP3"   "BCL2L11" "TP53"    "YAP1"    "YWHAZ"   "STAT3"  
## [29] "PARP1"   "CTNNB1"  "PRDX1"   "PDK1"    "PIK3CA"  "PRKCA"   "MAPK3"  
## [36] "TFRC"    "TGM2"    "NCOA3"   "MYH9"    "IRS1"    "JUN"     "RAF1"   
## [43] "TYMS"    "ANXA7"   "CLDN7"   "CTNNA1"  "EIF4G1"  "YBX1"    "RPS6"   
## [50] "GAB2"    "NDRG1"   "PECAM1"  "YWHAB"   "SETD2"   "FOXM1"   "MAPK9"  
## [57] "PRKAA1"  "AKT1"    "CDK1"    "RAD51"   "MSH6"    "STMN1"   "CASP9"  
## [64] "PREX1"   "EEF2K"   "CHGA"    "EZH2"    "BCL2L1"  "ACVRL1"  "TSC2"   
## [71] "CCNB1"   "MRE11A"  "NFKB1"   "ANLN"    "G6PD"    "MSH2"    "RICTOR" 
## [78] "PEA15"   "FASN"    "ASNS"    "ERCC1"   "INPP4B"  "XBP1"    "RBM15"  
## [85] "AR"      "TSC1"   
## [1] "86 unique genes selected."
##   [1] "HSPA1A"  "AKT1"    "VHL"     "MTOR"    "MAPK8"   "MYH9"    "CDKN1A" 
##   [8] "FOXO3"   "ATM"     "CASP8"   "MACC1"   "PTEN"    "KRAS"    "NRAS"   
##  [15] "PTK2"    "ETS1"    "STAT5A"  "CCND1"   "YAP1"    "ITGA2"   "MAPK1"  
##  [22] "ANLN"    "TGM2"    "G6PD"    "ESR1"    "MET"     "BCL2"    "NOTCH3" 
##  [29] "IGF1R"   "XIAP"    "ARID1A"  "BID"     "YWHAZ"   "CHEK1"   "FN1"    
##  [36] "NCOA3"   "GAB2"    "CTNNB1"  "RB1"     "PIK3R1"  "SRSF1"   "TUBA1B" 
##  [43] "SQSTM1"  "RBM15"   "FASN"    "TTF1"    "PARP1"   "CCNE2"   "RAB25"  
##  [50] "MYC"     "CASP3"   "BCL2L11" "MSH6"    "PIK3CA"  "ERBB3"   "CDH2"   
##  [57] "IGFBP2"  "GATA3"   "TSC1"    "INPP4B"  "PRDX1"   "BAP1"    "ERRFI1" 
##  [64] "CDKN1B"  "IRS1"    "JUN"     "EZH2"    "SHC1"    "MAPT"    "CHEK2"  
##  [71] "AXL"     "EGFR"    "CAV1"    "ANXA1"   "TFF1"    "STAT3"   "ASNS"   
##  [78] "FOXM1"   "RET"     "NDRG1"   "LCN2"    "RAD50"   "PXN"     "BRCA2"  
##  [85] "E2F1"    "CASP9"   "CDKN2A"  "CCNE1"   "MAPK9"   "RAF1"    "AKT2"   
##  [92] "BCL2L1"  "DVL3"    "SMAD3"   "PRKCA"   "MAPK3"   "AKT1S1"  "RPTOR"  
##  [99] "AR"      "TFRC"   
## [1] "100 unique genes selected."
##   [1] "HSPA1A"  "AKT1"    "VHL"     "MTOR"    "MAPK8"   "MYH9"    "CDKN1A" 
##   [8] "FOXO3"   "ATM"     "CASP8"   "MACC1"   "PTEN"    "KRAS"    "NRAS"   
##  [15] "PTK2"    "ETS1"    "CCND1"   "PIK3R1"  "XIAP"    "CHEK1"   "IGF1R"  
##  [22] "SRSF1"   "TUBA1B"  "STAT5A"  "KIT"     "NCOA3"   "EGFR"    "EZH2"   
##  [29] "PTGS2"   "MET"     "AKT2"    "YBX1"    "PRKAA1"  "PXN"     "AXL"    
##  [36] "MSH2"    "CASP3"   "CCNE1"   "YAP1"    "EIF4E"   "EIF4G1"  "GAPDH"  
##  [43] "ITGA2"   "PRKCA"   "MAPK1"   "TFRC"    "YWHAE"   "RAB11A"  "ANLN"   
##  [50] "RICTOR"  "TP53BP1" "BRAF"    "RB1"     "CTNNA1"  "G6PD"    "IGFBP2" 
##  [57] "RBM15"   "FASN"    "INPP4B"  "TSC1"    "TTF1"    "PRDX1"   "XBP1"   
##  [64] "MSH6"    "PREX1"   "PARP1"   "CCNE2"   "RAB25"   "BCL2"    "MYC"    
##  [71] "BCL2L11" "PIK3CA"  "ARID1A"  "BID"     "GAB2"    "BCL2L1"  "YWHAZ"  
##  [78] "NF2"     "STMN1"   "CDK1"    "CCNB1"   "GATA3"   "BRCA2"   "MYH11"  
##  [85] "E2F1"    "CASP9"   "CDKN2A"  "MAPK9"   "RAF1"    "DVL3"    "SMAD3"  
##  [92] "MAPK3"   "ESR1"    "NOTCH3"  "YWHAB"   "FN1"     "XRCC1"   "PEA15"  
##  [99] "ACACA"   "EEF2"    "NRG1"    "NDRG1"   "AKT1S1"  "GSK3A"   "CDH2"   
## [106] "TYMS"    "PDK1"    "FOXM1"   "COL6A1"  "ANXA1"   "SQSTM1"  "ASNS"   
## [113] "ACVRL1"  "AR"      "MAPT"    "RAD51"   "ERCC1"   "CDKN1B"  "SMAD4"  
## [120] "PDCD4"   "CTNNB1"  "WWTR1"   "TSC2"   
## [1] "123 unique genes selected."
##   [1] "RB1"      "XIAP"     "HSPA1A"   "AKT1"     "VHL"      "MTOR"    
##   [7] "MAPK8"    "ETS1"     "ARID1A"   "BID"      "MYH9"     "CDKN1A"  
##  [13] "FOXO3"    "ATM"      "CASP8"    "MACC1"    "PTEN"     "KRAS"    
##  [19] "NRAS"     "PTK2"     "CCND1"    "PIK3R1"   "CHEK1"    "IGF1R"   
##  [25] "SRSF1"    "TUBA1B"   "STAT5A"   "ERBB3"    "ACACA"    "KIT"     
##  [31] "NCOA3"    "EGFR"     "EZH2"     "PTGS2"    "MET"      "AKT2"    
##  [37] "YBX1"     "PRKAA1"   "PXN"      "AXL"      "MYC"      "MSH2"    
##  [43] "CASP3"    "CCNE1"    "YAP1"     "EIF4E"    "EIF4G1"   "GAPDH"   
##  [49] "ITGA2"    "PRKCA"    "MAPK1"    "TFRC"     "YWHAE"    "RAB11A"  
##  [55] "GAB2"     "ANLN"     "RICTOR"   "TP53BP1"  "BRAF"     "SQSTM1"  
##  [61] "TGM2"     "EEF2"     "FASN"     "CTNNA1"   "G6PD"     "COL6A1"  
##  [67] "ANXA1"    "STMN1"    "YWHAB"    "CDH2"     "CDK1"     "PREX1"   
##  [73] "CCNB1"    "IGFBP2"   "NDRG1"    "AKT1S1"   "BCL2L1"   "TYMS"    
##  [79] "STAT3"    "KDR"      "FOXM1"    "MSH6"     "RPS6"     "SERPINE1"
##  [85] "MAPK9"    "RBM3"     "LCN2"     "SYP"      "RBM15"    "PRDX1"   
##  [91] "INPP4B"   "XBP1"     "GATA3"    "TTF1"     "TSC1"     "MYH11"   
##  [97] "BRCA2"    "ACVRL1"   "AR"       "MAPT"     "CHEK2"    "PRRT2"   
## [103] "E2F1"     "YWHAZ"    "CTNNB1"   "ERRFI1"   "PDCD4"    "ADAR"    
## [109] "PEA15"    "XRCC5"    "PARP1"    "FN1"      "SHC1"     "BAP1"    
## [115] "SMAD3"    "EEF2K"    "NFE2L2"   "ERCC1"    "PDK1"     "ANXA7"   
## [121] "JUN"      "PIK3R2"   "ACACB"    "PARK7"    "DIRAS3"   "GSK3A"   
## [127] "SRC"      "XRCC1"    "SNAI2"    "ASNS"    
## [1] "130 unique genes selected."
##  [1] "HSPA1A" "AKT1"   "VHL"    "MTOR"   "MAPK8"  "CDKN1A" "STAT5A" "MYH9"  
##  [9] "FOXO3"  "ATM"    "CASP8"  "MACC1"  "CCND1"  "YAP1"   "MAPK1"  "ANLN"  
## [17] "ETS1"   "XIAP"   "ARID1A" "BID"    "NCOA3"  "GAB2"   "PTEN"   "KRAS"  
## [25] "NRAS"   "PTK2"   "ITGA2"  "FN1"    "G6PD"   "GAPDH"  "CTNNB1" "TGM2"  
## [1] "32 unique genes selected."
##  [1] "HSPA1A" "AKT1"   "VHL"    "MTOR"   "MAPK8"  "MYH9"   "CDKN1A" "FOXO3" 
##  [9] "ATM"    "CASP8"  "MACC1"  "STAT5A" "CCND1"  "YAP1"   "MAPK1"  "ANLN"  
## [17] "ESR1"   "MET"    "G6PD"   "BCL2"   "KRAS"   "NOTCH3" "IGF1R"  "ETS1"  
## [25] "XIAP"   "ARID1A" "BID"    "PTEN"   "NRAS"   "PTK2"   "YWHAZ"  "CHEK1" 
## [33] "FN1"    "NCOA3"  "GAB2"   "ITGA2"  "TGM2"   "PIK3R1" "SRSF1"  "TUBA1B"
## [41] "FASN"   "IGFBP2" "RBM15"  "GATA3"  "PEA15"  "INPP4B" "ACVRL1" "TSC1"  
## [49] "CDK1"   "PRDX1"  "XBP1"   "TFRC"   "PREX1"  "EGFR"   "GAPDH"  "STMN1" 
## [57] "CCNB1"  "FOXM1" 
## [1] "58 unique genes selected."
##   [1] "IGFBP2"   "PDCD4"    "GAPDH"    "FASN"     "MYH11"    "TFRC"    
##   [7] "GATA3"    "ATM"      "TTF1"     "G6PD"     "AR"       "PTEN"    
##  [13] "MSH6"     "MSH2"     "SQSTM1"   "FN1"      "EEF2"     "HSPA1A"  
##  [19] "RPS6"     "SYP"      "CTNNB1"   "TGM2"     "CDH2"     "CCND1"   
##  [25] "SERPINE1" "PRKCA"    "PIK3R1"   "TUBA1B"   "COL6A1"   "CDKN1A"  
##  [31] "PEA15"    "CTNNA1"   "NDRG1"    "ERBB3"    "ANXA1"    "ADAR"    
##  [37] "YWHAZ"    "YWHAB"    "PXN"      "ERRFI1"   "EIF4G1"   "STMN1"   
##  [43] "PIK3R2"   "ITGA2"    "MYH9"     "YWHAE"    "RAB11A"   "PARP1"   
##  [49] "KDR"      "CDK1"     "BCL2L1"   "CCNB1"    "PREX1"    "IDH3A"   
##  [55] "ESR1"     "MET"      "BAP1"     "AKT2"     "BCL2"     "KIT"     
##  [61] "NCOA3"    "NF2"      "KRAS"     "NRAS"     "RB1"      "PTK2"    
##  [67] "CDKN1B"   "IRS1"     "MYC"      "EGFR"     "JUN"      "NOTCH3"  
##  [73] "BCL2L11"  "EZH2"     "RAF1"     "PTGS2"    "ETS1"     "SHC1"    
##  [79] "FOXO3"    "AKT1"     "STAT5A"   "STAT3"    "XIAP"     "CASP8"   
##  [85] "CHEK1"    "DVL3"     "GSK3B"    "IGF1R"    "MAPT"     "YBX1"    
##  [91] "PRKAA1"   "MAPK8"    "SRSF1"    "ARID1A"   "CCNE2"    "BID"     
##  [97] "CHEK2"    "PRKCD"    "RAB25"    "PRRT2"    "MACC1"    "ACACA"   
## [103] "E2F1"     "AXL"      "CAV1"     "CASP3"    "CCNE1"    "TFF1"    
## [109] "YAP1"     "ASNS"     "EIF4E"    "EIF4EBP1" "FOXM1"    "PRDX1"   
## [115] "PIK3CA"   "MAPK1"    "RET"      "RPS6KB1"  "GAB2"     "WWTR1"   
## [121] "ANLN"     "DIABLO"   "NEK7"     "RICTOR"   "ERCC1"    "INPP4B"  
## [127] "TP53BP1"  "BRAF"     "LCN2"     "RAD50"    "NOTCH1"   "RAD51"   
## [133] "BECN1"    "EEF2K"    "AKT1S1"   "ANXA7"    "SMAD4"    "XRCC1"   
## [139] "DIRAS3"   "RBM15"    "VHL"      "TSC1"     "ACVRL1"   "XBP1"    
## [145] "PDK1"     "RBM3"     "PARK7"    "ERBB2"    "SMAD1"    "CASP9"   
## [151] "CDKN2A"   "MAPK9"    "SMAD3"    "MAPK3"   
## [1] "154 unique genes selected."
print(genes.all)
##   [1] "DIRAS3"   "MAPK14"   "YAP1"     "CDKN1B"   "ERBB2"    "G6PD"    
##   [7] "KDR"      "ERBB3"    "AKT1S1"   "MAPK8"    "PRKCD"    "EIF4EBP1"
##  [13] "IGFBP2"   "RPS6KA1"  "MRE11A"   "FN1"      "BCL2L11"  "ASNS"    
##  [19] "SRC"      "AKT2"     "AKT3"     "AKT1"     "CDH2"     "RAD51"   
##  [25] "MET"      "NRAS"     "TP53"     "CLDN7"    "IGF1R"    "RBM15"   
##  [31] "BECN1"    "RB1"      "ESR1"     "PTEN"     "PIK3CA"   "CDKN1A"  
##  [37] "GATA3"    "PEA15"    "SMAD3"    "RAF1"     "EIF4G1"   "AXL"     
##  [43] "ATM"      "MAPK1"    "TP53BP1"  "NEK7"     "BIRC2"    "NOTCH1"  
##  [49] "MAPK9"    "YWHAZ"    "VASP"     "XRCC5"    "ITGA2"    "CASP7"   
##  [55] "BAP1"     "STK11"    "ADAR"     "BRCA2"    "EGFR"     "CCNE1"   
##  [61] "FASN"     "EEF2"     "MTOR"     "SERPINE1" "YWHAE"    "MAPK3"   
##  [67] "INPP4B"   "PCNA"     "ACVRL1"   "TSC1"     "CHEK2"    "BAK1"    
##  [73] "SMAD4"    "TSC2"     "PECAM1"   "CTNNB1"   "LCN2"     "YBX1"    
##  [79] "RPS6"     "NFE2L2"   "MAPT"     "CDH3"     "PRKCA"    "ANLN"    
##  [85] "PDCD4"    "SHC1"     "TTF1"     "SMAD1"    "STMN1"    "RICTOR"  
##  [91] "JUN"      "EIF4E"    "CHEK1"    "CDH1"     "STAT3"    "ACACA"   
##  [97] "WWTR1"    "FOXO3"    "GSK3B"    "GSK3A"    "PTK2"     "PARK7"   
## [103] "TGM2"     "BCL2"     "PRRT2"    "RAB11B"   "RAB11A"   "ETS1"    
## [109] "ACACB"    "CDK1"     "MS4A1"    "EEF2K"    "LCK"      "KEAP1"   
## [115] "E2F1"     "XRCC1"    "CTNNA1"   "NFKB1"    "RAD50"    "MYC"     
## [121] "IRS1"     "VHL"      "CCND1"    "CAV1"     "PIK3R1"   "AR"      
## [127] "PRDX1"    "NCOA3"    "XBP1"     "BCL2L1"   "TP63"     "GAPDH"   
## [133] "TYMS"     "MSH6"     "KIT"      "CCNB1"    "BRAF"     "TUBA1B"  
## [139] "MYH11"    "NF2"      "DVL3"     "PTCH1"    "NRG1"     "KRT5"    
## [145] "ARAF"     "RPS6KB1"  "MYH9"     "NOTCH3"   "KRAS"     "PDK1"    
## [151] "MAP2K1"   "PRKAA1"   "FOXM1"    "COL6A1"   "STAT5A"   "XIAP"    
## [157] "NDRG1"    "PGR"      "GAB2"     "YWHAB"    "PIK3R2"   "ANXA1"   
## [163] "EZH2"     "RAB25"    "ERCC1"    "BAX"      "BID"      "ARID1A"  
## [169] "TFRC"     "HSPA1A"   "PXN"      "CCNE2"    "PTGS2"    "ERRFI1"  
## [175] "SYP"      "PARP1"    "RBM3"     "CASP9"    "CASP3"    "NAPSA"   
## [181] "SYK"      "RPTOR"    "SETD2"    "ANXA7"    "BAD"      "SNAI2"   
## [187] "MSH2"     "CASP8"    "PREX1"    "RET"      "TFF1"     "CDKN2A"  
## [193] "DIABLO"   "MACC1"    "CHGA"     "IDH3A"    "SQSTM1"   "KCNJ13"  
## [199] "SRSF1"
print("199 unique genes in total.")
## [1] "199 unique genes in total."
saveRDS(geneNames, file = "data/sel_features/gene_converted/genes_methods_merged.rds")

2. Pathway Analysis

A. GO Classification

ggo_MF <- list()#functional profile of a geneset for Molecular Function
ggo_BP <- list()#functional profile of a geneset for Biological Process
ggo_CC <- list()#functional profile of a geneset for Cellular Component


for(z in 1:length(geneNames)){
  print(z)
  input <- geneNames[[z]]

  ggo_MF[[z]] <- groupGO(gene=input,
    OrgDb = org.Hs.eg.db,
    ont="MF",
    keyType="SYMBOL",
    readable=TRUE)
  
  ggo_BP[[z]] <- groupGO(gene=input,
    OrgDb = org.Hs.eg.db,
    ont="BP",
    keyType="SYMBOL",
    readable=TRUE)

  ggo_CC[[z]] <- groupGO(gene=input,
    OrgDb = org.Hs.eg.db,
    ont="CC",
    keyType="SYMBOL",
    readable=TRUE)    
}
## [1] 1
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 7
## [1] 8
## [1] 9
## [1] 10
## [1] 11
for(z in 1:length(geneNames)) {
  print(head(ggo_MF[[z]]))
  print(head(ggo_BP[[z]]))
  print(head(ggo_CC[[z]]))
}
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/94
## GO:0003824 GO:0003824           catalytic activity    43     43/94
## GO:0005198 GO:0005198 structural molecule activity     4      4/94
## GO:0005215 GO:0005215         transporter activity     4      4/94
## GO:0005488 GO:0005488                      binding    92     92/94
## GO:0009055 GO:0009055   electron transfer activity     0      0/94
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 MYH9
## GO:0003824                                                                                                                                                                                                                                                                                  ERBB2/KRAS/CCND1/AKT1/FASN/PIK3R1/XIAP/CHEK1/IGF1R/TUBA1B/CDK1/ACACA/RAF1/AKT3/EEF2/GSK3B/MSH6/KDR/ASNS/CDKN1A/MAPK1/STK11/ADAR/MAPK3/ACVRL1/RAB11B/EEF2K/PRKAA1/CASP9/PDK1/ATM/BIRC2/MAPK9/PCNA/AXL/CASP3/PARP1/PRDX1/PIK3CA/PRKCA/TGM2/TYMS/SETD2
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TUBA1B/CLDN7/CTNNA1/RPS6
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  IGF1R/BAX/BCL2/BAK1
## GO:0005488 NOTCH1/ERBB2/NF2/KRAS/CCND1/AKT1/BCL2L1/AR/FASN/RB1/PIK3R1/XIAP/CHEK1/IGF1R/SRSF1/TUBA1B/CDK1/YBX1/BECN1/ERBB3/FOXO3/ACACA/E2F1/MYC/BCL2L11/RAF1/XBP1/AKT3/EEF2/EIF4G1/GSK3B/MSH6/ITGA2/KDR/ASNS/CDKN1A/PEA15/MAPK1/STK11/ADAR/MAPK3/ACVRL1/TSC2/JUN/RAB11B/EEF2K/DVL3/PRKAA1/FOXM1/YWHAB/BAX/CASP9/PDK1/TFRC/TP53/CTNNB1/MACC1/YAP1/CDH2/ATM/BIRC2/MAPK9/PCNA/SMAD4/ETS1/NRG1/NOTCH3/PGR/ANXA1/SNAI2/SQSTM1/BCL2/AXL/BAK1/CASP3/YWHAZ/STAT3/PARP1/PRDX1/PIK3CA/PRKCA/TGM2/MYH9/IRS1/TYMS/ANXA7/CLDN7/CTNNA1/RPS6/NDRG1/PECAM1/SETD2
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    28     28/94
## GO:0002376 GO:0002376 immune system process    46     46/94
## GO:0008152 GO:0008152     metabolic process    84     84/94
## GO:0009987 GO:0009987      cellular process    93     93/94
## GO:0016032 GO:0016032         viral process    12     12/94
## GO:0022414 GO:0022414  reproductive process    27     27/94
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                  NOTCH1/AKT1/BCL2L1/AR/RB1/IGF1R/CDK1/FOXO3/BCL2L11/MSH6/ITGA2/KDR/STK11/BAX/CTNNB1/ATM/PCNA/SMAD4/PGR/BCL2/AXL/BAK1/CASP3/STAT3/PARP1/PIK3CA/MYH9/CTNNA1
## GO:0002376                                                                                                                                                                                                                                                                     NOTCH1/ERBB2/AKT1/RB1/PIK3R1/XIAP/IGF1R/BECN1/FOXO3/MYC/BCL2L11/RAF1/XBP1/MSH6/ITGA2/CDKN1A/MAPK1/STK11/ADAR/MAPK3/BAX/CHGA/TFRC/TP53/CTNNB1/ATM/BIRC2/MAPK9/ETS1/ANXA1/SNAI2/SQSTM1/BCL2/AXL/BAK1/CASP3/YWHAZ/STAT3/PARP1/PRDX1/PIK3CA/PRKCA/MYH9/NDRG1/PECAM1/SETD2
## GO:0008152                                                          NOTCH1/ERBB2/NF2/KRAS/CCND1/AKT1/AR/FASN/RB1/PIK3R1/XIAP/CHEK1/IGF1R/SRSF1/CDK1/YBX1/BECN1/ERBB3/FOXO3/ACACA/E2F1/MYC/RAF1/XBP1/AKT3/EEF2/EIF4G1/GSK3B/MSH6/ITGA2/KDR/ASNS/CDKN1A/MAPK1/STK11/ADAR/MAPK3/ACVRL1/TSC2/JUN/RAB11B/EEF2K/DVL3/PRKAA1/FOXM1/YWHAB/BAX/CASP9/PDK1/TFRC/TP53/CTNNB1/MACC1/YAP1/ATM/BIRC2/MAPK9/PCNA/SMAD4/ETS1/NRG1/NOTCH3/PGR/ANXA1/SNAI2/SQSTM1/BCL2/AXL/BAK1/CASP3/YWHAZ/STAT3/PARP1/PRDX1/PIK3CA/PRKCA/TGM2/MYH9/IRS1/TYMS/ANXA7/RPS6/PECAM1/SETD2
## GO:0009987 NOTCH1/ERBB2/NF2/KRAS/CCND1/AKT1/BCL2L1/AR/FASN/RB1/PIK3R1/XIAP/CHEK1/IGF1R/SRSF1/TUBA1B/CDK1/YBX1/BECN1/ERBB3/FOXO3/ACACA/E2F1/MYC/BCL2L11/RAF1/XBP1/AKT3/EEF2/EIF4G1/GSK3B/MSH6/ITGA2/KDR/ASNS/CDKN1A/PEA15/MAPK1/STK11/ADAR/MAPK3/ACVRL1/TSC2/JUN/RAB11B/EEF2K/DVL3/PRKAA1/FOXM1/YWHAB/BAX/CASP9/CHGA/PDK1/TFRC/TP53/CTNNB1/MACC1/YAP1/CDH2/ATM/BIRC2/MAPK9/PCNA/SMAD4/ETS1/NRG1/NOTCH3/PGR/ANXA1/SNAI2/SQSTM1/BCL2/AXL/BAK1/CASP3/YWHAZ/STAT3/PARP1/PRDX1/PIK3CA/PRKCA/TGM2/MYH9/IRS1/TYMS/ANXA7/CLDN7/CTNNA1/RPS6/NDRG1/PECAM1/SETD2
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                            NOTCH1/AKT1/CDK1/BECN1/GSK3B/ITGA2/ADAR/JUN/TFRC/TP53/BCL2/AXL
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                        NOTCH1/AKT1/BCL2L1/AR/RB1/IGF1R/CDK1/FOXO3/BCL2L11/MSH6/ITGA2/KDR/STK11/BAX/CTNNB1/ATM/PCNA/SMAD4/PGR/BCL2/AXL/BAK1/CASP3/PARP1/PIK3CA/MYH9/CTNNA1
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    66     66/94
## GO:0044423 GO:0044423           virion component     0      0/94
## GO:0110165 GO:0110165 cellular anatomical entity    93     93/94
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               geneID
## GO:0032991                                                                                                                                                           NOTCH1/ERBB2/CCND1/AKT1/BCL2L1/AR/RB1/PIK3R1/CHEK1/IGF1R/SRSF1/CDK1/YBX1/BECN1/ERBB3/FOXO3/E2F1/MYC/BCL2L11/XBP1/EEF2/EIF4G1/GSK3B/MSH6/ITGA2/KDR/CDKN1A/PEA15/STK11/ADAR/ACVRL1/TSC2/JUN/DVL3/PRKAA1/FOXM1/BAX/CASP9/PDK1/TFRC/TP53/CTNNB1/YAP1/CDH2/ATM/BIRC2/PCNA/SMAD4/ETS1/NOTCH3/PGR/SNAI2/BCL2/AXL/BAK1/CASP3/STAT3/PARP1/PIK3CA/PRKCA/TGM2/MYH9/IRS1/CTNNA1/RPS6/PECAM1
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
## GO:0110165 NOTCH1/ERBB2/NF2/KRAS/CCND1/AKT1/BCL2L1/AR/FASN/RB1/PIK3R1/XIAP/CHEK1/IGF1R/SRSF1/TUBA1B/CDK1/YBX1/BECN1/ERBB3/FOXO3/ACACA/E2F1/MYC/BCL2L11/RAF1/XBP1/AKT3/EEF2/EIF4G1/GSK3B/MSH6/ITGA2/KDR/ASNS/CDKN1A/PEA15/MAPK1/STK11/ADAR/MAPK3/ACVRL1/TSC2/JUN/RAB11B/EEF2K/DVL3/PRKAA1/FOXM1/YWHAB/BAX/CASP9/CHGA/PDK1/TFRC/TP53/CTNNB1/MACC1/YAP1/CDH2/ATM/BIRC2/MAPK9/PCNA/SMAD4/ETS1/NRG1/NOTCH3/PGR/ANXA1/SNAI2/SQSTM1/BCL2/AXL/BAK1/CASP3/YWHAZ/STAT3/PARP1/PRDX1/PIK3CA/PRKCA/TGM2/MYH9/IRS1/TYMS/ANXA7/CLDN7/CTNNA1/RPS6/NDRG1/PECAM1/SETD2
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     0      0/19
## GO:0003824 GO:0003824           catalytic activity    11     11/19
## GO:0005198 GO:0005198 structural molecule activity     1      1/19
## GO:0005215 GO:0005215         transporter activity     0      0/19
## GO:0005488 GO:0005488                      binding    18     18/19
## GO:0009055 GO:0009055   electron transfer activity     0      0/19
##                                                                                                          geneID
## GO:0003774                                                                                                     
## GO:0003824                                          AKT1/RAD51/MAPK9/MAPK3/CHEK1/CDK1/EEF2K/TYMS/XIAP/RET/PRKCD
## GO:0005198                                                                                                CLDN7
## GO:0005215                                                                                                     
## GO:0005488 AKT1/RAD51/MAPK9/MAPK3/STMN1/CHEK1/CDK1/EEF2K/TYMS/FOXM1/XIAP/PREX1/RET/TFRC/CLDN7/ANXA1/PRKCD/WWTR1
## GO:0009055                                                                                                     
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     3      3/19
## GO:0002376 GO:0002376 immune system process     9      9/19
## GO:0008152 GO:0008152     metabolic process    16     16/19
## GO:0009987 GO:0009987      cellular process    18     18/19
## GO:0016032 GO:0016032         viral process     3      3/19
## GO:0022414 GO:0022414  reproductive process     3      3/19
##                                                                                                          geneID
## GO:0000003                                                                                      AKT1/RAD51/CDK1
## GO:0002376                                                     AKT1/MAPK9/MAPK3/XIAP/PREX1/RET/TFRC/ANXA1/PRKCD
## GO:0008152             AKT1/RAD51/MAPK9/MAPK3/CHEK1/CDK1/EEF2K/TYMS/FOXM1/XIAP/PREX1/RET/TFRC/ANXA1/PRKCD/WWTR1
## GO:0009987 AKT1/RAD51/MAPK9/MAPK3/STMN1/CHEK1/CDK1/EEF2K/TYMS/FOXM1/XIAP/PREX1/RET/TFRC/CLDN7/ANXA1/PRKCD/WWTR1
## GO:0016032                                                                                       AKT1/CDK1/TFRC
## GO:0022414                                                                                      AKT1/RAD51/CDK1
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex     8      8/19
## GO:0044423 GO:0044423           virion component     0      0/19
## GO:0110165 GO:0110165 cellular anatomical entity    18     18/19
##                                                                                                          geneID
## GO:0032991                                                           AKT1/RAD51/CHEK1/CDK1/FOXM1/RET/TFRC/WWTR1
## GO:0044423                                                                                                     
## GO:0110165 AKT1/RAD51/MAPK9/MAPK3/STMN1/CHEK1/CDK1/EEF2K/TYMS/FOXM1/XIAP/PREX1/RET/TFRC/CLDN7/ANXA1/PRKCD/WWTR1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     0       0/6
## GO:0003824 GO:0003824           catalytic activity     3       3/6
## GO:0005198 GO:0005198 structural molecule activity     1       1/6
## GO:0005215 GO:0005215         transporter activity     0       0/6
## GO:0005488 GO:0005488                      binding     6       6/6
## GO:0009055 GO:0009055   electron transfer activity     0       0/6
##                                   geneID
## GO:0003774                              
## GO:0003824                G6PD/FASN/MSH6
## GO:0005198                           FN1
## GO:0005215                              
## GO:0005488 FN1/G6PD/FASN/MSH6/TFRC/PDCD4
## GO:0009055                              
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     1       1/6
## GO:0002376 GO:0002376 immune system process     4       4/6
## GO:0008152 GO:0008152     metabolic process     6       6/6
## GO:0009987 GO:0009987      cellular process     6       6/6
## GO:0016032 GO:0016032         viral process     1       1/6
## GO:0022414 GO:0022414  reproductive process     1       1/6
##                                   geneID
## GO:0000003                          MSH6
## GO:0002376            FN1/G6PD/MSH6/TFRC
## GO:0008152 FN1/G6PD/FASN/MSH6/TFRC/PDCD4
## GO:0009987 FN1/G6PD/FASN/MSH6/TFRC/PDCD4
## GO:0016032                          TFRC
## GO:0022414                          MSH6
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex     3       3/6
## GO:0044423 GO:0044423           virion component     0       0/6
## GO:0110165 GO:0110165 cellular anatomical entity     6       6/6
##                                   geneID
## GO:0032991                 FN1/MSH6/TFRC
## GO:0044423                              
## GO:0110165 FN1/G6PD/FASN/MSH6/TFRC/PDCD4
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/86
## GO:0003824 GO:0003824           catalytic activity    40     40/86
## GO:0005198 GO:0005198 structural molecule activity     4      4/86
## GO:0005215 GO:0005215         transporter activity     3      3/86
## GO:0005488 GO:0005488                      binding    84     84/86
## GO:0009055 GO:0009055   electron transfer activity     0      0/86
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         MYH9
## GO:0003824                                                                                                                                                                                                                                                        XIAP/MAPK8/CDKN1A/VHL/CCND1/PIK3R1/CHEK1/IGF1R/TUBA1B/ACACA/ERBB2/AXL/CASP3/PARP1/PRDX1/PDK1/PIK3CA/PRKCA/MAPK3/TGM2/NCOA3/RAF1/TYMS/SETD2/MAPK9/PRKAA1/AKT1/CDK1/RAD51/MSH6/CASP9/EEF2K/EZH2/ACVRL1/G6PD/MSH2/FASN/ASNS/ERCC1/INPP4B
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TUBA1B/CLDN7/CTNNA1/RPS6
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                              IGF1R/BCL2/BAK1
## GO:0005488 RB1/XIAP/ETS1/MAPK8/ARID1A/BID/CDKN1A/MYC/VHL/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/ERBB3/FOXO3/ACACA/BCL2/ERBB2/AXL/BAK1/CASP3/BCL2L11/TP53/YAP1/YWHAZ/STAT3/PARP1/CTNNB1/PRDX1/PDK1/PIK3CA/PRKCA/MAPK3/TFRC/TGM2/NCOA3/MYH9/IRS1/JUN/RAF1/TYMS/ANXA7/CLDN7/CTNNA1/EIF4G1/YBX1/RPS6/GAB2/NDRG1/PECAM1/YWHAB/SETD2/FOXM1/MAPK9/PRKAA1/AKT1/CDK1/RAD51/MSH6/STMN1/CASP9/PREX1/EEF2K/EZH2/BCL2L1/ACVRL1/TSC2/CCNB1/NFKB1/ANLN/G6PD/MSH2/RICTOR/PEA15/FASN/ASNS/ERCC1/INPP4B/XBP1/RBM15/AR/TSC1
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    22     22/86
## GO:0002376 GO:0002376 immune system process    46     46/86
## GO:0008152 GO:0008152     metabolic process    74     74/86
## GO:0009987 GO:0009987      cellular process    85     85/86
## GO:0016032 GO:0016032         viral process     7      7/86
## GO:0022414 GO:0022414  reproductive process    21     21/86
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                       RB1/IGF1R/FOXO3/BCL2/AXL/BAK1/CASP3/BCL2L11/STAT3/PARP1/CTNNB1/PIK3CA/MYH9/CTNNA1/AKT1/CDK1/RAD51/MSH6/BCL2L1/MSH2/ERCC1/AR
## GO:0002376                                                                                                                                                                                                                                RB1/XIAP/ETS1/MAPK8/ARID1A/BID/CDKN1A/MYC/PIK3R1/IGF1R/FOXO3/BCL2/ERBB2/AXL/BAK1/CASP3/BCL2L11/TP53/YWHAZ/STAT3/PARP1/CTNNB1/PRDX1/PIK3CA/PRKCA/MAPK3/TFRC/MYH9/RAF1/GAB2/NDRG1/PECAM1/SETD2/MAPK9/AKT1/MSH6/PREX1/CHGA/EZH2/NFKB1/G6PD/MSH2/ERCC1/XBP1/RBM15/TSC1
## GO:0008152                                                                     RB1/XIAP/ETS1/MAPK8/ARID1A/BID/CDKN1A/MYC/VHL/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/ERBB3/FOXO3/ACACA/BCL2/ERBB2/AXL/BAK1/CASP3/TP53/YAP1/YWHAZ/STAT3/PARP1/CTNNB1/PRDX1/PDK1/PIK3CA/PRKCA/MAPK3/TFRC/TGM2/NCOA3/MYH9/IRS1/JUN/RAF1/TYMS/ANXA7/EIF4G1/YBX1/RPS6/PECAM1/YWHAB/SETD2/FOXM1/MAPK9/PRKAA1/AKT1/CDK1/RAD51/MSH6/CASP9/PREX1/EEF2K/EZH2/ACVRL1/TSC2/CCNB1/NFKB1/G6PD/MSH2/RICTOR/FASN/ASNS/ERCC1/INPP4B/XBP1/RBM15/AR/TSC1
## GO:0009987 RB1/XIAP/ETS1/MAPK8/ARID1A/BID/CDKN1A/MYC/VHL/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/ERBB3/FOXO3/ACACA/BCL2/ERBB2/AXL/BAK1/CASP3/BCL2L11/TP53/YAP1/YWHAZ/STAT3/PARP1/CTNNB1/PRDX1/PDK1/PIK3CA/PRKCA/MAPK3/TFRC/TGM2/NCOA3/MYH9/IRS1/JUN/RAF1/TYMS/ANXA7/CLDN7/CTNNA1/EIF4G1/YBX1/RPS6/GAB2/NDRG1/PECAM1/YWHAB/SETD2/FOXM1/MAPK9/PRKAA1/AKT1/CDK1/RAD51/MSH6/STMN1/CASP9/PREX1/EEF2K/CHGA/EZH2/BCL2L1/ACVRL1/TSC2/CCNB1/NFKB1/ANLN/G6PD/MSH2/RICTOR/PEA15/FASN/ASNS/ERCC1/INPP4B/XBP1/RBM15/AR/TSC1
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                  BCL2/AXL/TP53/TFRC/JUN/AKT1/CDK1
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                             RB1/IGF1R/FOXO3/BCL2/AXL/BAK1/CASP3/BCL2L11/PARP1/CTNNB1/PIK3CA/MYH9/CTNNA1/AKT1/CDK1/RAD51/MSH6/BCL2L1/MSH2/ERCC1/AR
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    58     58/86
## GO:0044423 GO:0044423           virion component     0      0/86
## GO:0110165 GO:0110165 cellular anatomical entity    85     85/86
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       geneID
## GO:0032991                                                                                                                                                        RB1/ETS1/ARID1A/CDKN1A/MYC/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/ERBB3/FOXO3/BCL2/ERBB2/AXL/BAK1/CASP3/BCL2L11/TP53/YAP1/STAT3/PARP1/CTNNB1/PDK1/PIK3CA/PRKCA/TFRC/TGM2/NCOA3/MYH9/IRS1/JUN/CTNNA1/EIF4G1/YBX1/RPS6/PECAM1/FOXM1/PRKAA1/AKT1/CDK1/RAD51/MSH6/CASP9/EZH2/BCL2L1/ACVRL1/TSC2/CCNB1/NFKB1/MSH2/RICTOR/PEA15/ERCC1/XBP1/RBM15/AR/TSC1
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
## GO:0110165 RB1/XIAP/ETS1/MAPK8/ARID1A/BID/CDKN1A/MYC/VHL/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/ERBB3/FOXO3/ACACA/BCL2/ERBB2/AXL/BAK1/CASP3/BCL2L11/TP53/YAP1/YWHAZ/STAT3/PARP1/CTNNB1/PRDX1/PDK1/PIK3CA/PRKCA/MAPK3/TFRC/TGM2/NCOA3/MYH9/IRS1/JUN/RAF1/TYMS/ANXA7/CLDN7/CTNNA1/EIF4G1/YBX1/RPS6/GAB2/NDRG1/PECAM1/YWHAB/SETD2/FOXM1/MAPK9/PRKAA1/AKT1/CDK1/RAD51/MSH6/STMN1/CASP9/PREX1/EEF2K/CHGA/EZH2/BCL2L1/ACVRL1/TSC2/CCNB1/NFKB1/ANLN/G6PD/MSH2/RICTOR/PEA15/FASN/ASNS/ERCC1/INPP4B/XBP1/RBM15/AR/TSC1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1     1/100
## GO:0003824 GO:0003824           catalytic activity    47    47/100
## GO:0005198 GO:0005198 structural molecule activity     2     2/100
## GO:0005215 GO:0005215         transporter activity     2     2/100
## GO:0005488 GO:0005488                      binding   100   100/100
## GO:0009055 GO:0009055   electron transfer activity     0     0/100
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          MYH9
## GO:0003824                                                                                                                                                                                                                                                                                                          HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/KRAS/NRAS/PTK2/CCND1/MAPK1/TGM2/G6PD/MET/IGF1R/XIAP/CHEK1/NCOA3/PIK3R1/TUBA1B/FASN/PARP1/RAB25/CASP3/MSH6/PIK3CA/INPP4B/PRDX1/BAP1/EZH2/CHEK2/AXL/EGFR/ASNS/RET/RAD50/BRCA2/CASP9/CCNE1/MAPK9/RAF1/AKT2/PRKCA/MAPK3
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    FN1/TUBA1B
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    BCL2/IGF1R
## GO:0005488 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/STAT5A/CCND1/YAP1/ITGA2/MAPK1/ANLN/TGM2/G6PD/ESR1/MET/BCL2/NOTCH3/IGF1R/XIAP/ARID1A/BID/YWHAZ/CHEK1/FN1/NCOA3/GAB2/CTNNB1/RB1/PIK3R1/SRSF1/TUBA1B/SQSTM1/RBM15/FASN/TTF1/PARP1/CCNE2/RAB25/MYC/CASP3/BCL2L11/MSH6/PIK3CA/ERBB3/CDH2/IGFBP2/GATA3/TSC1/INPP4B/PRDX1/BAP1/ERRFI1/CDKN1B/IRS1/JUN/EZH2/SHC1/MAPT/CHEK2/AXL/EGFR/CAV1/ANXA1/TFF1/STAT3/ASNS/FOXM1/RET/NDRG1/LCN2/RAD50/PXN/BRCA2/E2F1/CASP9/CDKN2A/CCNE1/MAPK9/RAF1/AKT2/BCL2L1/DVL3/SMAD3/PRKCA/MAPK3/AKT1S1/RPTOR/AR/TFRC
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    31    31/100
## GO:0002376 GO:0002376 immune system process    55    55/100
## GO:0008152 GO:0008152     metabolic process    89    89/100
## GO:0009987 GO:0009987      cellular process   100   100/100
## GO:0016032 GO:0016032         viral process     9     9/100
## GO:0022414 GO:0022414  reproductive process    30    30/100
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                              AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/ITGA2/ESR1/BCL2/IGF1R/CTNNB1/RB1/PARP1/CCNE2/CASP3/BCL2L11/MSH6/PIK3CA/IGFBP2/GATA3/ERRFI1/CDKN1B/AXL/EGFR/STAT3/RAD50/BRCA2/CCNE1/BCL2L1/AR
## GO:0002376                                                                                                                                                                                                                                                            HSPA1A/AKT1/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/PTK2/ETS1/ITGA2/MAPK1/G6PD/ESR1/BCL2/IGF1R/XIAP/ARID1A/BID/YWHAZ/FN1/GAB2/CTNNB1/RB1/PIK3R1/SQSTM1/RBM15/PARP1/MYC/CASP3/BCL2L11/MSH6/PIK3CA/IGFBP2/GATA3/TSC1/PRDX1/BAP1/EZH2/MAPT/AXL/CAV1/ANXA1/STAT3/RET/NDRG1/LCN2/MAPK9/RAF1/SMAD3/PRKCA/MAPK3/RPTOR/TFRC
## GO:0008152                                                                  HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/PTK2/ETS1/STAT5A/CCND1/YAP1/ITGA2/MAPK1/TGM2/G6PD/ESR1/MET/BCL2/NOTCH3/IGF1R/XIAP/ARID1A/BID/YWHAZ/CHEK1/FN1/NCOA3/CTNNB1/RB1/PIK3R1/SRSF1/SQSTM1/RBM15/FASN/TTF1/PARP1/CCNE2/MYC/CASP3/MSH6/PIK3CA/ERBB3/GATA3/TSC1/INPP4B/PRDX1/BAP1/ERRFI1/CDKN1B/IRS1/JUN/EZH2/SHC1/MAPT/CHEK2/AXL/EGFR/CAV1/ANXA1/TFF1/STAT3/ASNS/FOXM1/RET/LCN2/RAD50/BRCA2/E2F1/CASP9/CDKN2A/CCNE1/MAPK9/RAF1/AKT2/DVL3/SMAD3/PRKCA/MAPK3/AKT1S1/RPTOR/AR/TFRC
## GO:0009987 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/STAT5A/CCND1/YAP1/ITGA2/MAPK1/ANLN/TGM2/G6PD/ESR1/MET/BCL2/NOTCH3/IGF1R/XIAP/ARID1A/BID/YWHAZ/CHEK1/FN1/NCOA3/GAB2/CTNNB1/RB1/PIK3R1/SRSF1/TUBA1B/SQSTM1/RBM15/FASN/TTF1/PARP1/CCNE2/RAB25/MYC/CASP3/BCL2L11/MSH6/PIK3CA/ERBB3/CDH2/IGFBP2/GATA3/TSC1/INPP4B/PRDX1/BAP1/ERRFI1/CDKN1B/IRS1/JUN/EZH2/SHC1/MAPT/CHEK2/AXL/EGFR/CAV1/ANXA1/TFF1/STAT3/ASNS/FOXM1/RET/NDRG1/LCN2/RAD50/PXN/BRCA2/E2F1/CASP9/CDKN2A/CCNE1/MAPK9/RAF1/AKT2/BCL2L1/DVL3/SMAD3/PRKCA/MAPK3/AKT1S1/RPTOR/AR/TFRC
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 HSPA1A/AKT1/ITGA2/BCL2/JUN/AXL/EGFR/CAV1/TFRC
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                    AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/ITGA2/ESR1/BCL2/IGF1R/CTNNB1/RB1/PARP1/CCNE2/CASP3/BCL2L11/MSH6/PIK3CA/IGFBP2/GATA3/ERRFI1/CDKN1B/AXL/EGFR/RAD50/BRCA2/CCNE1/BCL2L1/AR
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    67    67/100
## GO:0044423 GO:0044423           virion component     0     0/100
## GO:0110165 GO:0110165 cellular anatomical entity   100   100/100
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   geneID
## GO:0032991                                                                                                                                                                                         HSPA1A/AKT1/MTOR/MYH9/CDKN1A/FOXO3/ATM/CASP8/ETS1/STAT5A/CCND1/YAP1/ITGA2/TGM2/ESR1/MET/BCL2/NOTCH3/IGF1R/ARID1A/CHEK1/FN1/NCOA3/CTNNB1/RB1/PIK3R1/SRSF1/RBM15/PARP1/CCNE2/MYC/CASP3/BCL2L11/MSH6/PIK3CA/ERBB3/CDH2/GATA3/TSC1/BAP1/CDKN1B/IRS1/JUN/EZH2/SHC1/MAPT/AXL/EGFR/CAV1/STAT3/FOXM1/RET/RAD50/PXN/BRCA2/E2F1/CASP9/CDKN2A/CCNE1/BCL2L1/DVL3/SMAD3/PRKCA/AKT1S1/RPTOR/AR/TFRC
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
## GO:0110165 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/STAT5A/CCND1/YAP1/ITGA2/MAPK1/ANLN/TGM2/G6PD/ESR1/MET/BCL2/NOTCH3/IGF1R/XIAP/ARID1A/BID/YWHAZ/CHEK1/FN1/NCOA3/GAB2/CTNNB1/RB1/PIK3R1/SRSF1/TUBA1B/SQSTM1/RBM15/FASN/TTF1/PARP1/CCNE2/RAB25/MYC/CASP3/BCL2L11/MSH6/PIK3CA/ERBB3/CDH2/IGFBP2/GATA3/TSC1/INPP4B/PRDX1/BAP1/ERRFI1/CDKN1B/IRS1/JUN/EZH2/SHC1/MAPT/CHEK2/AXL/EGFR/CAV1/ANXA1/TFF1/STAT3/ASNS/FOXM1/RET/NDRG1/LCN2/RAD50/PXN/BRCA2/E2F1/CASP9/CDKN2A/CCNE1/MAPK9/RAF1/AKT2/BCL2L1/DVL3/SMAD3/PRKCA/MAPK3/AKT1S1/RPTOR/AR/TFRC
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/123
## GO:0003824 GO:0003824           catalytic activity    59    59/123
## GO:0005198 GO:0005198 structural molecule activity     5     5/123
## GO:0005215 GO:0005215         transporter activity     2     2/123
## GO:0005488 GO:0005488                      binding   123   123/123
## GO:0009055 GO:0009055   electron transfer activity     0     0/123
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   MYH9/MYH11
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                  HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/KRAS/NRAS/PTK2/CCND1/PIK3R1/XIAP/CHEK1/IGF1R/TUBA1B/KIT/NCOA3/EGFR/EZH2/PTGS2/MET/AKT2/PRKAA1/AXL/MSH2/CASP3/CCNE1/GAPDH/PRKCA/MAPK1/RAB11A/BRAF/G6PD/FASN/INPP4B/PRDX1/MSH6/PARP1/RAB25/PIK3CA/CDK1/BRCA2/CASP9/MAPK9/RAF1/MAPK3/XRCC1/ACACA/EEF2/GSK3A/TYMS/PDK1/ASNS/ACVRL1/RAD51/ERCC1
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TUBA1B/CTNNA1/MYH11/FN1/COL6A1
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   IGF1R/BCL2
## GO:0005488 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/CCND1/PIK3R1/XIAP/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/KIT/NCOA3/EGFR/EZH2/PTGS2/MET/AKT2/YBX1/PRKAA1/PXN/AXL/MSH2/CASP3/CCNE1/YAP1/EIF4E/EIF4G1/GAPDH/ITGA2/PRKCA/MAPK1/TFRC/YWHAE/RAB11A/ANLN/RICTOR/TP53BP1/BRAF/RB1/CTNNA1/G6PD/IGFBP2/RBM15/FASN/INPP4B/TSC1/TTF1/PRDX1/XBP1/MSH6/PREX1/PARP1/CCNE2/RAB25/BCL2/MYC/BCL2L11/PIK3CA/ARID1A/BID/GAB2/BCL2L1/YWHAZ/NF2/STMN1/CDK1/CCNB1/GATA3/BRCA2/MYH11/E2F1/CASP9/CDKN2A/MAPK9/RAF1/DVL3/SMAD3/MAPK3/ESR1/NOTCH3/YWHAB/FN1/XRCC1/PEA15/ACACA/EEF2/NRG1/NDRG1/AKT1S1/GSK3A/CDH2/TYMS/PDK1/FOXM1/COL6A1/ANXA1/SQSTM1/ASNS/ACVRL1/AR/MAPT/RAD51/ERCC1/CDKN1B/SMAD4/PDCD4/CTNNB1/WWTR1/TSC2
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    38    38/123
## GO:0002376 GO:0002376 immune system process    58    58/123
## GO:0008152 GO:0008152     metabolic process   107   107/123
## GO:0009987 GO:0009987      cellular process   123   123/123
## GO:0016032 GO:0016032         viral process     9     9/123
## GO:0022414 GO:0022414  reproductive process    38    38/123
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/IGF1R/KIT/EGFR/PTGS2/AXL/MSH2/CASP3/CCNE1/ITGA2/RB1/CTNNA1/IGFBP2/MSH6/PARP1/CCNE2/BCL2/BCL2L11/PIK3CA/BCL2L1/CDK1/GATA3/BRCA2/ESR1/GSK3A/COL6A1/AR/RAD51/ERCC1/CDKN1B/SMAD4/CTNNB1
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                       HSPA1A/AKT1/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/PTK2/ETS1/PIK3R1/XIAP/IGF1R/KIT/EZH2/AXL/MSH2/CASP3/GAPDH/ITGA2/PRKCA/MAPK1/TFRC/YWHAE/TP53BP1/BRAF/RB1/G6PD/IGFBP2/RBM15/TSC1/PRDX1/XBP1/MSH6/PREX1/PARP1/BCL2/MYC/BCL2L11/PIK3CA/ARID1A/BID/GAB2/YWHAZ/GATA3/MAPK9/RAF1/SMAD3/MAPK3/ESR1/FN1/NDRG1/ANXA1/SQSTM1/MAPT/ERCC1/CTNNB1
## GO:0008152                                                                                                  HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/PTK2/ETS1/CCND1/PIK3R1/XIAP/CHEK1/IGF1R/SRSF1/STAT5A/KIT/NCOA3/EGFR/EZH2/PTGS2/MET/AKT2/YBX1/PRKAA1/AXL/MSH2/CASP3/CCNE1/YAP1/EIF4E/EIF4G1/GAPDH/ITGA2/PRKCA/MAPK1/TFRC/YWHAE/RICTOR/TP53BP1/BRAF/RB1/G6PD/RBM15/FASN/INPP4B/TSC1/TTF1/PRDX1/XBP1/MSH6/PREX1/PARP1/CCNE2/BCL2/MYC/PIK3CA/ARID1A/BID/YWHAZ/NF2/CDK1/CCNB1/GATA3/BRCA2/E2F1/CASP9/CDKN2A/MAPK9/RAF1/DVL3/SMAD3/MAPK3/ESR1/NOTCH3/YWHAB/FN1/XRCC1/ACACA/EEF2/NRG1/AKT1S1/GSK3A/TYMS/PDK1/FOXM1/COL6A1/ANXA1/SQSTM1/ASNS/ACVRL1/AR/MAPT/RAD51/ERCC1/CDKN1B/SMAD4/PDCD4/CTNNB1/WWTR1/TSC2
## GO:0009987 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/CCND1/PIK3R1/XIAP/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/KIT/NCOA3/EGFR/EZH2/PTGS2/MET/AKT2/YBX1/PRKAA1/PXN/AXL/MSH2/CASP3/CCNE1/YAP1/EIF4E/EIF4G1/GAPDH/ITGA2/PRKCA/MAPK1/TFRC/YWHAE/RAB11A/ANLN/RICTOR/TP53BP1/BRAF/RB1/CTNNA1/G6PD/IGFBP2/RBM15/FASN/INPP4B/TSC1/TTF1/PRDX1/XBP1/MSH6/PREX1/PARP1/CCNE2/RAB25/BCL2/MYC/BCL2L11/PIK3CA/ARID1A/BID/GAB2/BCL2L1/YWHAZ/NF2/STMN1/CDK1/CCNB1/GATA3/BRCA2/MYH11/E2F1/CASP9/CDKN2A/MAPK9/RAF1/DVL3/SMAD3/MAPK3/ESR1/NOTCH3/YWHAB/FN1/XRCC1/PEA15/ACACA/EEF2/NRG1/NDRG1/AKT1S1/GSK3A/CDH2/TYMS/PDK1/FOXM1/COL6A1/ANXA1/SQSTM1/ASNS/ACVRL1/AR/MAPT/RAD51/ERCC1/CDKN1B/SMAD4/PDCD4/CTNNB1/WWTR1/TSC2
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              HSPA1A/AKT1/EGFR/AXL/ITGA2/TFRC/BCL2/CDK1/GSK3A
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/IGF1R/KIT/EGFR/PTGS2/AXL/MSH2/CASP3/CCNE1/ITGA2/RB1/CTNNA1/IGFBP2/MSH6/PARP1/CCNE2/BCL2/BCL2L11/PIK3CA/BCL2L1/CDK1/GATA3/BRCA2/ESR1/GSK3A/COL6A1/AR/RAD51/ERCC1/CDKN1B/SMAD4/CTNNB1
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    84    84/123
## GO:0044423 GO:0044423           virion component     0     0/123
## GO:0110165 GO:0110165 cellular anatomical entity   123   123/123
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  geneID
## GO:0032991                                                                                                                                                                                                                         HSPA1A/AKT1/MTOR/MYH9/CDKN1A/FOXO3/ATM/CASP8/ETS1/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/STAT5A/KIT/NCOA3/EGFR/EZH2/PTGS2/MET/YBX1/PRKAA1/PXN/AXL/MSH2/CASP3/CCNE1/YAP1/EIF4E/EIF4G1/GAPDH/ITGA2/PRKCA/TFRC/RAB11A/RICTOR/TP53BP1/RB1/CTNNA1/RBM15/TSC1/XBP1/MSH6/PARP1/CCNE2/BCL2/MYC/BCL2L11/PIK3CA/ARID1A/BCL2L1/CDK1/CCNB1/GATA3/BRCA2/MYH11/E2F1/CASP9/CDKN2A/DVL3/SMAD3/ESR1/NOTCH3/FN1/XRCC1/PEA15/EEF2/AKT1S1/GSK3A/CDH2/PDK1/FOXM1/COL6A1/ACVRL1/AR/MAPT/RAD51/ERCC1/CDKN1B/SMAD4/CTNNB1/WWTR1/TSC2
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
## GO:0110165 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/CCND1/PIK3R1/XIAP/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/KIT/NCOA3/EGFR/EZH2/PTGS2/MET/AKT2/YBX1/PRKAA1/PXN/AXL/MSH2/CASP3/CCNE1/YAP1/EIF4E/EIF4G1/GAPDH/ITGA2/PRKCA/MAPK1/TFRC/YWHAE/RAB11A/ANLN/RICTOR/TP53BP1/BRAF/RB1/CTNNA1/G6PD/IGFBP2/RBM15/FASN/INPP4B/TSC1/TTF1/PRDX1/XBP1/MSH6/PREX1/PARP1/CCNE2/RAB25/BCL2/MYC/BCL2L11/PIK3CA/ARID1A/BID/GAB2/BCL2L1/YWHAZ/NF2/STMN1/CDK1/CCNB1/GATA3/BRCA2/MYH11/E2F1/CASP9/CDKN2A/MAPK9/RAF1/DVL3/SMAD3/MAPK3/ESR1/NOTCH3/YWHAB/FN1/XRCC1/PEA15/ACACA/EEF2/NRG1/NDRG1/AKT1S1/GSK3A/CDH2/TYMS/PDK1/FOXM1/COL6A1/ANXA1/SQSTM1/ASNS/ACVRL1/AR/MAPT/RAD51/ERCC1/CDKN1B/SMAD4/PDCD4/CTNNB1/WWTR1/TSC2
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/130
## GO:0003824 GO:0003824           catalytic activity    64    64/130
## GO:0005198 GO:0005198 structural molecule activity     6     6/130
## GO:0005215 GO:0005215         transporter activity     1     1/130
## GO:0005488 GO:0005488                      binding   130   130/130
## GO:0009055 GO:0009055   electron transfer activity     0     0/130
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       MYH9/MYH11
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                              XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/KRAS/NRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/TUBA1B/ACACA/KIT/NCOA3/EGFR/EZH2/PTGS2/MET/AKT2/PRKAA1/AXL/MSH2/CASP3/CCNE1/GAPDH/PRKCA/MAPK1/RAB11A/BRAF/TGM2/EEF2/FASN/G6PD/CDK1/TYMS/KDR/MSH6/MAPK9/PRDX1/INPP4B/BRCA2/ACVRL1/CHEK2/ADAR/XRCC5/PARP1/BAP1/EEF2K/ERCC1/PDK1/ACACB/PARK7/DIRAS3/GSK3A/SRC/XRCC1/ASNS
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TUBA1B/CTNNA1/COL6A1/RPS6/MYH11/FN1
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            IGF1R
## GO:0005488 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/ERBB3/ACACA/KIT/NCOA3/EGFR/EZH2/PTGS2/MET/AKT2/YBX1/PRKAA1/PXN/AXL/MYC/MSH2/CASP3/CCNE1/YAP1/EIF4E/EIF4G1/GAPDH/ITGA2/PRKCA/MAPK1/TFRC/YWHAE/RAB11A/GAB2/ANLN/RICTOR/TP53BP1/BRAF/SQSTM1/TGM2/EEF2/FASN/CTNNA1/G6PD/COL6A1/ANXA1/STMN1/YWHAB/CDH2/CDK1/PREX1/CCNB1/IGFBP2/NDRG1/AKT1S1/BCL2L1/TYMS/STAT3/KDR/FOXM1/MSH6/RPS6/SERPINE1/MAPK9/RBM3/LCN2/SYP/RBM15/PRDX1/INPP4B/XBP1/GATA3/TTF1/TSC1/MYH11/BRCA2/ACVRL1/AR/MAPT/CHEK2/PRRT2/E2F1/YWHAZ/CTNNB1/ERRFI1/PDCD4/ADAR/PEA15/XRCC5/PARP1/FN1/SHC1/BAP1/SMAD3/EEF2K/NFE2L2/ERCC1/PDK1/ANXA7/JUN/PIK3R2/ACACB/PARK7/DIRAS3/GSK3A/SRC/XRCC1/SNAI2/ASNS
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    36    36/130
## GO:0002376 GO:0002376 immune system process    63    63/130
## GO:0008152 GO:0008152     metabolic process   114   114/130
## GO:0009987 GO:0009987      cellular process   130   130/130
## GO:0016032 GO:0016032         viral process    10    10/130
## GO:0022414 GO:0022414  reproductive process    35    35/130
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          RB1/AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/IGF1R/KIT/EGFR/PTGS2/AXL/MSH2/CASP3/CCNE1/ITGA2/CTNNA1/COL6A1/CDK1/IGFBP2/BCL2L1/STAT3/KDR/MSH6/GATA3/BRCA2/AR/CTNNB1/ERRFI1/PARP1/ERCC1/PARK7/DIRAS3/GSK3A/SRC
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                             RB1/XIAP/HSPA1A/AKT1/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/PTK2/PIK3R1/IGF1R/KIT/EZH2/AXL/MYC/MSH2/CASP3/GAPDH/ITGA2/PRKCA/MAPK1/TFRC/YWHAE/GAB2/TP53BP1/BRAF/SQSTM1/G6PD/ANXA1/PREX1/IGFBP2/NDRG1/STAT3/MSH6/SERPINE1/MAPK9/LCN2/RBM15/PRDX1/XBP1/GATA3/TSC1/MAPT/YWHAZ/CTNNB1/ADAR/XRCC5/PARP1/FN1/BAP1/SMAD3/NFE2L2/ERCC1/PIK3R2/PARK7/SRC/SNAI2
## GO:0008152                                                                                              RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/STAT5A/ERBB3/ACACA/KIT/NCOA3/EGFR/EZH2/PTGS2/MET/AKT2/YBX1/PRKAA1/AXL/MYC/MSH2/CASP3/CCNE1/YAP1/EIF4E/EIF4G1/GAPDH/ITGA2/PRKCA/MAPK1/TFRC/YWHAE/RICTOR/TP53BP1/BRAF/SQSTM1/TGM2/EEF2/FASN/G6PD/COL6A1/ANXA1/YWHAB/CDK1/PREX1/CCNB1/AKT1S1/TYMS/STAT3/KDR/FOXM1/MSH6/RPS6/SERPINE1/MAPK9/RBM3/LCN2/RBM15/PRDX1/INPP4B/XBP1/GATA3/TTF1/TSC1/BRCA2/ACVRL1/AR/MAPT/CHEK2/E2F1/YWHAZ/CTNNB1/ERRFI1/PDCD4/ADAR/XRCC5/PARP1/FN1/SHC1/BAP1/SMAD3/EEF2K/NFE2L2/ERCC1/PDK1/ANXA7/JUN/PIK3R2/ACACB/PARK7/DIRAS3/GSK3A/SRC/XRCC1/SNAI2/ASNS
## GO:0009987 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/ERBB3/ACACA/KIT/NCOA3/EGFR/EZH2/PTGS2/MET/AKT2/YBX1/PRKAA1/PXN/AXL/MYC/MSH2/CASP3/CCNE1/YAP1/EIF4E/EIF4G1/GAPDH/ITGA2/PRKCA/MAPK1/TFRC/YWHAE/RAB11A/GAB2/ANLN/RICTOR/TP53BP1/BRAF/SQSTM1/TGM2/EEF2/FASN/CTNNA1/G6PD/COL6A1/ANXA1/STMN1/YWHAB/CDH2/CDK1/PREX1/CCNB1/IGFBP2/NDRG1/AKT1S1/BCL2L1/TYMS/STAT3/KDR/FOXM1/MSH6/RPS6/SERPINE1/MAPK9/RBM3/LCN2/SYP/RBM15/PRDX1/INPP4B/XBP1/GATA3/TTF1/TSC1/MYH11/BRCA2/ACVRL1/AR/MAPT/CHEK2/PRRT2/E2F1/YWHAZ/CTNNB1/ERRFI1/PDCD4/ADAR/PEA15/XRCC5/PARP1/FN1/SHC1/BAP1/SMAD3/EEF2K/NFE2L2/ERCC1/PDK1/ANXA7/JUN/PIK3R2/ACACB/PARK7/DIRAS3/GSK3A/SRC/XRCC1/SNAI2/ASNS
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              HSPA1A/AKT1/EGFR/AXL/ITGA2/TFRC/CDK1/ADAR/JUN/GSK3A
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                RB1/AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/IGF1R/KIT/EGFR/PTGS2/AXL/MSH2/CASP3/CCNE1/ITGA2/CTNNA1/COL6A1/CDK1/IGFBP2/BCL2L1/KDR/MSH6/GATA3/BRCA2/AR/CTNNB1/ERRFI1/PARP1/ERCC1/PARK7/DIRAS3/GSK3A/SRC
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    87    87/130
## GO:0044423 GO:0044423           virion component     0     0/130
## GO:0110165 GO:0110165 cellular anatomical entity   130   130/130
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      geneID
## GO:0032991                                                                                                                                                                                                                                                  RB1/HSPA1A/AKT1/MTOR/ETS1/ARID1A/MYH9/CDKN1A/FOXO3/ATM/CASP8/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/STAT5A/ERBB3/KIT/NCOA3/EGFR/EZH2/PTGS2/MET/YBX1/PRKAA1/PXN/AXL/MYC/MSH2/CASP3/CCNE1/YAP1/EIF4E/EIF4G1/GAPDH/ITGA2/PRKCA/TFRC/RAB11A/RICTOR/TP53BP1/TGM2/EEF2/CTNNA1/COL6A1/CDH2/CDK1/CCNB1/AKT1S1/BCL2L1/STAT3/KDR/FOXM1/MSH6/RPS6/SERPINE1/RBM3/RBM15/XBP1/GATA3/TSC1/MYH11/BRCA2/ACVRL1/AR/MAPT/E2F1/CTNNB1/ADAR/PEA15/XRCC5/PARP1/FN1/SHC1/BAP1/SMAD3/NFE2L2/ERCC1/PDK1/JUN/PIK3R2/ACACB/PARK7/GSK3A/XRCC1/SNAI2
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## GO:0110165 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/ERBB3/ACACA/KIT/NCOA3/EGFR/EZH2/PTGS2/MET/AKT2/YBX1/PRKAA1/PXN/AXL/MYC/MSH2/CASP3/CCNE1/YAP1/EIF4E/EIF4G1/GAPDH/ITGA2/PRKCA/MAPK1/TFRC/YWHAE/RAB11A/GAB2/ANLN/RICTOR/TP53BP1/BRAF/SQSTM1/TGM2/EEF2/FASN/CTNNA1/G6PD/COL6A1/ANXA1/STMN1/YWHAB/CDH2/CDK1/PREX1/CCNB1/IGFBP2/NDRG1/AKT1S1/BCL2L1/TYMS/STAT3/KDR/FOXM1/MSH6/RPS6/SERPINE1/MAPK9/RBM3/LCN2/SYP/RBM15/PRDX1/INPP4B/XBP1/GATA3/TTF1/TSC1/MYH11/BRCA2/ACVRL1/AR/MAPT/CHEK2/PRRT2/E2F1/YWHAZ/CTNNB1/ERRFI1/PDCD4/ADAR/PEA15/XRCC5/PARP1/FN1/SHC1/BAP1/SMAD3/EEF2K/NFE2L2/ERCC1/PDK1/ANXA7/JUN/PIK3R2/ACACB/PARK7/DIRAS3/GSK3A/SRC/XRCC1/SNAI2/ASNS
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/32
## GO:0003824 GO:0003824           catalytic activity    19     19/32
## GO:0005198 GO:0005198 structural molecule activity     1      1/32
## GO:0005215 GO:0005215         transporter activity     0      0/32
## GO:0005488 GO:0005488                      binding    32     32/32
## GO:0009055 GO:0009055   electron transfer activity     0      0/32
##                                                                                                                                                                                    geneID
## GO:0003774                                                                                                                                                                           MYH9
## GO:0003824                                                                         HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/CCND1/MAPK1/XIAP/NCOA3/PTEN/KRAS/NRAS/PTK2/G6PD/GAPDH/TGM2
## GO:0005198                                                                                                                                                                            FN1
## GO:0005215                                                                                                                                                                               
## GO:0005488 HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/STAT5A/MYH9/FOXO3/ATM/CASP8/MACC1/CCND1/YAP1/MAPK1/ANLN/ETS1/XIAP/ARID1A/BID/NCOA3/GAB2/PTEN/KRAS/NRAS/PTK2/ITGA2/FN1/G6PD/GAPDH/CTNNB1/TGM2
## GO:0009055                                                                                                                                                                               
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     9      9/32
## GO:0002376 GO:0002376 immune system process    21     21/32
## GO:0008152 GO:0008152     metabolic process    29     29/32
## GO:0009987 GO:0009987      cellular process    32     32/32
## GO:0016032 GO:0016032         viral process     3      3/32
## GO:0022414 GO:0022414  reproductive process     9      9/32
##                                                                                                                                                                                    geneID
## GO:0000003                                                                                                                               AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/ITGA2/CTNNB1
## GO:0002376                                                            HSPA1A/AKT1/MTOR/MAPK8/CDKN1A/MYH9/FOXO3/ATM/CASP8/MAPK1/ETS1/XIAP/ARID1A/BID/GAB2/PTK2/ITGA2/FN1/G6PD/GAPDH/CTNNB1
## GO:0008152                HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/STAT5A/MYH9/FOXO3/ATM/CASP8/MACC1/CCND1/YAP1/MAPK1/ETS1/XIAP/ARID1A/BID/NCOA3/PTEN/KRAS/PTK2/ITGA2/FN1/G6PD/GAPDH/CTNNB1/TGM2
## GO:0009987 HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/STAT5A/MYH9/FOXO3/ATM/CASP8/MACC1/CCND1/YAP1/MAPK1/ANLN/ETS1/XIAP/ARID1A/BID/NCOA3/GAB2/PTEN/KRAS/NRAS/PTK2/ITGA2/FN1/G6PD/GAPDH/CTNNB1/TGM2
## GO:0016032                                                                                                                                                              HSPA1A/AKT1/ITGA2
## GO:0022414                                                                                                                               AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/ITGA2/CTNNB1
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    19     19/32
## GO:0044423 GO:0044423           virion component     0      0/32
## GO:0110165 GO:0110165 cellular anatomical entity    32     32/32
##                                                                                                                                                                                    geneID
## GO:0032991                                                                   HSPA1A/AKT1/MTOR/CDKN1A/STAT5A/MYH9/FOXO3/ATM/CASP8/CCND1/YAP1/ETS1/ARID1A/NCOA3/ITGA2/FN1/GAPDH/CTNNB1/TGM2
## GO:0044423                                                                                                                                                                               
## GO:0110165 HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/STAT5A/MYH9/FOXO3/ATM/CASP8/MACC1/CCND1/YAP1/MAPK1/ANLN/ETS1/XIAP/ARID1A/BID/NCOA3/GAB2/PTEN/KRAS/NRAS/PTK2/ITGA2/FN1/G6PD/GAPDH/CTNNB1/TGM2
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/58
## GO:0003824 GO:0003824           catalytic activity    30     30/58
## GO:0005198 GO:0005198 structural molecule activity     2      2/58
## GO:0005215 GO:0005215         transporter activity     2      2/58
## GO:0005488 GO:0005488                      binding    58     58/58
## GO:0009055 GO:0009055   electron transfer activity     0      0/58
##                                                                                                                                                                                                                                                                                                                                           geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                  MYH9
## GO:0003824                                                                                                                                                               HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/CCND1/MAPK1/MET/G6PD/KRAS/IGF1R/XIAP/PTEN/NRAS/PTK2/CHEK1/NCOA3/TGM2/PIK3R1/TUBA1B/FASN/INPP4B/ACVRL1/CDK1/PRDX1/EGFR/GAPDH
## GO:0005198                                                                                                                                                                                                                                                                                                                            FN1/TUBA1B
## GO:0005215                                                                                                                                                                                                                                                                                                                            BCL2/IGF1R
## GO:0005488 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/STAT5A/CCND1/YAP1/MAPK1/ANLN/ESR1/MET/G6PD/BCL2/KRAS/NOTCH3/IGF1R/ETS1/XIAP/ARID1A/BID/PTEN/NRAS/PTK2/YWHAZ/CHEK1/FN1/NCOA3/GAB2/ITGA2/TGM2/PIK3R1/SRSF1/TUBA1B/FASN/IGFBP2/RBM15/GATA3/PEA15/INPP4B/ACVRL1/TSC1/CDK1/PRDX1/XBP1/TFRC/PREX1/EGFR/GAPDH/STMN1/CCNB1/FOXM1
## GO:0009055                                                                                                                                                                                                                                                                                                                                      
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    15     15/58
## GO:0002376 GO:0002376 immune system process    33     33/58
## GO:0008152 GO:0008152     metabolic process    51     51/58
## GO:0009987 GO:0009987      cellular process    58     58/58
## GO:0016032 GO:0016032         viral process     7      7/58
## GO:0022414 GO:0022414  reproductive process    15     15/58
##                                                                                                                                                                                                                                                                                                                                           geneID
## GO:0000003                                                                                                                                                                                                                                                      AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/ESR1/BCL2/IGF1R/PTEN/ITGA2/IGFBP2/GATA3/CDK1/EGFR
## GO:0002376                                                                                                                                               HSPA1A/AKT1/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MAPK1/ESR1/G6PD/BCL2/IGF1R/ETS1/XIAP/ARID1A/BID/PTK2/YWHAZ/FN1/GAB2/ITGA2/PIK3R1/IGFBP2/RBM15/GATA3/TSC1/PRDX1/XBP1/TFRC/PREX1/GAPDH
## GO:0008152                                          HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/STAT5A/CCND1/YAP1/MAPK1/ESR1/MET/G6PD/BCL2/KRAS/NOTCH3/IGF1R/ETS1/XIAP/ARID1A/BID/PTEN/PTK2/YWHAZ/CHEK1/FN1/NCOA3/ITGA2/TGM2/PIK3R1/SRSF1/FASN/RBM15/GATA3/INPP4B/ACVRL1/TSC1/CDK1/PRDX1/XBP1/TFRC/PREX1/EGFR/GAPDH/CCNB1/FOXM1
## GO:0009987 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/STAT5A/CCND1/YAP1/MAPK1/ANLN/ESR1/MET/G6PD/BCL2/KRAS/NOTCH3/IGF1R/ETS1/XIAP/ARID1A/BID/PTEN/NRAS/PTK2/YWHAZ/CHEK1/FN1/NCOA3/GAB2/ITGA2/TGM2/PIK3R1/SRSF1/TUBA1B/FASN/IGFBP2/RBM15/GATA3/PEA15/INPP4B/ACVRL1/TSC1/CDK1/PRDX1/XBP1/TFRC/PREX1/EGFR/GAPDH/STMN1/CCNB1/FOXM1
## GO:0016032                                                                                                                                                                                                                                                                                                 HSPA1A/AKT1/BCL2/ITGA2/CDK1/TFRC/EGFR
## GO:0022414                                                                                                                                                                                                                                                      AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/ESR1/BCL2/IGF1R/PTEN/ITGA2/IGFBP2/GATA3/CDK1/EGFR
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    37     37/58
## GO:0044423 GO:0044423           virion component     0      0/58
## GO:0110165 GO:0110165 cellular anatomical entity    58     58/58
##                                                                                                                                                                                                                                                                                                                                           geneID
## GO:0032991                                                                                                                     HSPA1A/AKT1/MTOR/MYH9/CDKN1A/FOXO3/ATM/CASP8/STAT5A/CCND1/YAP1/ESR1/MET/BCL2/NOTCH3/IGF1R/ETS1/ARID1A/CHEK1/FN1/NCOA3/ITGA2/TGM2/PIK3R1/SRSF1/RBM15/GATA3/PEA15/ACVRL1/TSC1/CDK1/XBP1/TFRC/EGFR/GAPDH/CCNB1/FOXM1
## GO:0044423                                                                                                                                                                                                                                                                                                                                      
## GO:0110165 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/STAT5A/CCND1/YAP1/MAPK1/ANLN/ESR1/MET/G6PD/BCL2/KRAS/NOTCH3/IGF1R/ETS1/XIAP/ARID1A/BID/PTEN/NRAS/PTK2/YWHAZ/CHEK1/FN1/NCOA3/GAB2/ITGA2/TGM2/PIK3R1/SRSF1/TUBA1B/FASN/IGFBP2/RBM15/GATA3/PEA15/INPP4B/ACVRL1/TSC1/CDK1/PRDX1/XBP1/TFRC/PREX1/EGFR/GAPDH/STMN1/CCNB1/FOXM1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/154
## GO:0003824 GO:0003824           catalytic activity    71    71/154
## GO:0005198 GO:0005198 structural molecule activity     6     6/154
## GO:0005215 GO:0005215         transporter activity     2     2/154
## GO:0005488 GO:0005488                      binding   154   154/154
## GO:0009055 GO:0009055   electron transfer activity     0     0/154
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           MYH11/MYH9
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GAPDH/FASN/ATM/G6PD/PTEN/MSH6/MSH2/EEF2/HSPA1A/TGM2/CCND1/PRKCA/PIK3R1/TUBA1B/CDKN1A/ADAR/RAB11A/PARP1/KDR/CDK1/IDH3A/MET/BAP1/AKT2/KIT/NCOA3/KRAS/NRAS/PTK2/EGFR/EZH2/RAF1/PTGS2/AKT1/XIAP/CASP8/CHEK1/GSK3B/IGF1R/PRKAA1/MAPK8/CHEK2/PRKCD/RAB25/ACACA/AXL/CASP3/CCNE1/ASNS/PRDX1/PIK3CA/MAPK1/RET/RPS6KB1/NEK7/ERCC1/INPP4B/BRAF/RAD50/RAD51/EEF2K/XRCC1/DIRAS3/VHL/ACVRL1/PDK1/PARK7/ERBB2/CASP9/MAPK9/MAPK3
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  MYH11/FN1/RPS6/TUBA1B/COL6A1/CTNNA1
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           BCL2/IGF1R
## GO:0005488 IGFBP2/PDCD4/GAPDH/FASN/MYH11/TFRC/GATA3/ATM/TTF1/G6PD/AR/PTEN/MSH6/MSH2/SQSTM1/FN1/EEF2/HSPA1A/RPS6/SYP/CTNNB1/TGM2/CDH2/CCND1/SERPINE1/PRKCA/PIK3R1/TUBA1B/COL6A1/CDKN1A/PEA15/CTNNA1/NDRG1/ERBB3/ANXA1/ADAR/YWHAZ/YWHAB/PXN/ERRFI1/EIF4G1/STMN1/PIK3R2/ITGA2/MYH9/YWHAE/RAB11A/PARP1/KDR/CDK1/BCL2L1/CCNB1/PREX1/IDH3A/ESR1/MET/BAP1/AKT2/BCL2/KIT/NCOA3/NF2/KRAS/NRAS/RB1/PTK2/CDKN1B/IRS1/MYC/EGFR/JUN/NOTCH3/BCL2L11/EZH2/RAF1/PTGS2/ETS1/SHC1/FOXO3/AKT1/STAT5A/STAT3/XIAP/CASP8/CHEK1/DVL3/GSK3B/IGF1R/MAPT/YBX1/PRKAA1/MAPK8/SRSF1/ARID1A/CCNE2/BID/CHEK2/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/AXL/CAV1/CASP3/CCNE1/TFF1/YAP1/ASNS/EIF4E/EIF4EBP1/FOXM1/PRDX1/PIK3CA/MAPK1/RET/RPS6KB1/GAB2/WWTR1/ANLN/DIABLO/NEK7/RICTOR/ERCC1/INPP4B/TP53BP1/BRAF/LCN2/RAD50/NOTCH1/RAD51/BECN1/EEF2K/AKT1S1/ANXA7/SMAD4/XRCC1/DIRAS3/RBM15/VHL/TSC1/ACVRL1/XBP1/PDK1/RBM3/PARK7/ERBB2/SMAD1/CASP9/CDKN2A/MAPK9/SMAD3/MAPK3
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    44    44/154
## GO:0002376 GO:0002376 immune system process    72    72/154
## GO:0008152 GO:0008152     metabolic process   136   136/154
## GO:0009987 GO:0009987      cellular process   154   154/154
## GO:0016032 GO:0016032         viral process    14    14/154
## GO:0022414 GO:0022414  reproductive process    43    43/154
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      IGFBP2/GATA3/ATM/AR/PTEN/MSH6/MSH2/CTNNB1/COL6A1/CTNNA1/ERRFI1/ITGA2/MYH9/PARP1/KDR/CDK1/BCL2L1/ESR1/BCL2/KIT/RB1/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/STAT3/CASP8/IGF1R/CCNE2/AXL/CASP3/CCNE1/PIK3CA/RPS6KB1/ERCC1/RAD50/NOTCH1/RAD51/SMAD4/DIRAS3/PARK7/SMAD1
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          IGFBP2/GAPDH/TFRC/GATA3/ATM/G6PD/MSH6/MSH2/SQSTM1/FN1/HSPA1A/CTNNB1/SERPINE1/PRKCA/PIK3R1/CDKN1A/NDRG1/ANXA1/ADAR/YWHAZ/PIK3R2/ITGA2/MYH9/YWHAE/PARP1/PREX1/ESR1/BAP1/BCL2/KIT/RB1/PTK2/MYC/BCL2L11/EZH2/RAF1/ETS1/FOXO3/AKT1/STAT3/XIAP/CASP8/IGF1R/MAPT/MAPK8/ARID1A/BID/PRKCD/AXL/CAV1/CASP3/PRDX1/PIK3CA/MAPK1/RET/RPS6KB1/GAB2/NEK7/ERCC1/TP53BP1/BRAF/LCN2/NOTCH1/BECN1/RBM15/TSC1/XBP1/PARK7/ERBB2/MAPK9/SMAD3/MAPK3
## GO:0008152                                                                                                            PDCD4/GAPDH/FASN/TFRC/GATA3/ATM/TTF1/G6PD/AR/PTEN/MSH6/MSH2/SQSTM1/FN1/EEF2/HSPA1A/RPS6/CTNNB1/TGM2/CCND1/SERPINE1/PRKCA/PIK3R1/COL6A1/CDKN1A/ERBB3/ANXA1/ADAR/YWHAZ/YWHAB/ERRFI1/EIF4G1/PIK3R2/ITGA2/MYH9/YWHAE/PARP1/KDR/CDK1/CCNB1/PREX1/IDH3A/ESR1/MET/BAP1/AKT2/BCL2/KIT/NCOA3/NF2/KRAS/RB1/PTK2/CDKN1B/IRS1/MYC/EGFR/JUN/NOTCH3/EZH2/RAF1/PTGS2/ETS1/SHC1/FOXO3/AKT1/STAT5A/STAT3/XIAP/CASP8/CHEK1/DVL3/GSK3B/IGF1R/MAPT/YBX1/PRKAA1/MAPK8/SRSF1/ARID1A/CCNE2/BID/CHEK2/PRKCD/MACC1/ACACA/E2F1/AXL/CAV1/CASP3/CCNE1/TFF1/YAP1/ASNS/EIF4E/EIF4EBP1/FOXM1/PRDX1/PIK3CA/MAPK1/RET/RPS6KB1/WWTR1/DIABLO/NEK7/RICTOR/ERCC1/INPP4B/TP53BP1/BRAF/LCN2/RAD50/NOTCH1/RAD51/BECN1/EEF2K/AKT1S1/ANXA7/SMAD4/XRCC1/DIRAS3/RBM15/VHL/TSC1/ACVRL1/XBP1/PDK1/RBM3/PARK7/ERBB2/SMAD1/CASP9/CDKN2A/MAPK9/SMAD3/MAPK3
## GO:0009987 IGFBP2/PDCD4/GAPDH/FASN/MYH11/TFRC/GATA3/ATM/TTF1/G6PD/AR/PTEN/MSH6/MSH2/SQSTM1/FN1/EEF2/HSPA1A/RPS6/SYP/CTNNB1/TGM2/CDH2/CCND1/SERPINE1/PRKCA/PIK3R1/TUBA1B/COL6A1/CDKN1A/PEA15/CTNNA1/NDRG1/ERBB3/ANXA1/ADAR/YWHAZ/YWHAB/PXN/ERRFI1/EIF4G1/STMN1/PIK3R2/ITGA2/MYH9/YWHAE/RAB11A/PARP1/KDR/CDK1/BCL2L1/CCNB1/PREX1/IDH3A/ESR1/MET/BAP1/AKT2/BCL2/KIT/NCOA3/NF2/KRAS/NRAS/RB1/PTK2/CDKN1B/IRS1/MYC/EGFR/JUN/NOTCH3/BCL2L11/EZH2/RAF1/PTGS2/ETS1/SHC1/FOXO3/AKT1/STAT5A/STAT3/XIAP/CASP8/CHEK1/DVL3/GSK3B/IGF1R/MAPT/YBX1/PRKAA1/MAPK8/SRSF1/ARID1A/CCNE2/BID/CHEK2/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/AXL/CAV1/CASP3/CCNE1/TFF1/YAP1/ASNS/EIF4E/EIF4EBP1/FOXM1/PRDX1/PIK3CA/MAPK1/RET/RPS6KB1/GAB2/WWTR1/ANLN/DIABLO/NEK7/RICTOR/ERCC1/INPP4B/TP53BP1/BRAF/LCN2/RAD50/NOTCH1/RAD51/BECN1/EEF2K/AKT1S1/ANXA7/SMAD4/XRCC1/DIRAS3/RBM15/VHL/TSC1/ACVRL1/XBP1/PDK1/RBM3/PARK7/ERBB2/SMAD1/CASP9/CDKN2A/MAPK9/SMAD3/MAPK3
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TFRC/HSPA1A/ADAR/ITGA2/CDK1/BCL2/EGFR/JUN/AKT1/GSK3B/AXL/CAV1/NOTCH1/BECN1
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            IGFBP2/GATA3/ATM/AR/PTEN/MSH6/MSH2/CTNNB1/COL6A1/CTNNA1/ERRFI1/ITGA2/MYH9/PARP1/KDR/CDK1/BCL2L1/ESR1/BCL2/KIT/RB1/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/CASP8/IGF1R/CCNE2/AXL/CASP3/CCNE1/PIK3CA/RPS6KB1/ERCC1/RAD50/NOTCH1/RAD51/SMAD4/DIRAS3/PARK7/SMAD1
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex   104   104/154
## GO:0044423 GO:0044423           virion component     0     0/154
## GO:0110165 GO:0110165 cellular anatomical entity   154   154/154
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          geneID
## GO:0032991                                                                                                                                                                                                                                                                                               GAPDH/MYH11/TFRC/GATA3/ATM/AR/MSH6/MSH2/FN1/EEF2/HSPA1A/RPS6/CTNNB1/TGM2/CDH2/CCND1/SERPINE1/PRKCA/PIK3R1/COL6A1/CDKN1A/PEA15/CTNNA1/ERBB3/ADAR/PXN/EIF4G1/PIK3R2/ITGA2/MYH9/RAB11A/PARP1/KDR/CDK1/BCL2L1/CCNB1/IDH3A/ESR1/MET/BAP1/BCL2/KIT/NCOA3/RB1/CDKN1B/IRS1/MYC/EGFR/JUN/NOTCH3/BCL2L11/EZH2/PTGS2/ETS1/SHC1/FOXO3/AKT1/STAT5A/STAT3/CASP8/CHEK1/DVL3/GSK3B/IGF1R/MAPT/YBX1/PRKAA1/SRSF1/ARID1A/CCNE2/E2F1/AXL/CAV1/CASP3/CCNE1/YAP1/EIF4E/FOXM1/PIK3CA/RET/WWTR1/DIABLO/RICTOR/ERCC1/TP53BP1/RAD50/NOTCH1/RAD51/BECN1/AKT1S1/SMAD4/XRCC1/RBM15/TSC1/ACVRL1/XBP1/PDK1/RBM3/PARK7/ERBB2/SMAD1/CASP9/CDKN2A/SMAD3
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## GO:0110165 IGFBP2/PDCD4/GAPDH/FASN/MYH11/TFRC/GATA3/ATM/TTF1/G6PD/AR/PTEN/MSH6/MSH2/SQSTM1/FN1/EEF2/HSPA1A/RPS6/SYP/CTNNB1/TGM2/CDH2/CCND1/SERPINE1/PRKCA/PIK3R1/TUBA1B/COL6A1/CDKN1A/PEA15/CTNNA1/NDRG1/ERBB3/ANXA1/ADAR/YWHAZ/YWHAB/PXN/ERRFI1/EIF4G1/STMN1/PIK3R2/ITGA2/MYH9/YWHAE/RAB11A/PARP1/KDR/CDK1/BCL2L1/CCNB1/PREX1/IDH3A/ESR1/MET/BAP1/AKT2/BCL2/KIT/NCOA3/NF2/KRAS/NRAS/RB1/PTK2/CDKN1B/IRS1/MYC/EGFR/JUN/NOTCH3/BCL2L11/EZH2/RAF1/PTGS2/ETS1/SHC1/FOXO3/AKT1/STAT5A/STAT3/XIAP/CASP8/CHEK1/DVL3/GSK3B/IGF1R/MAPT/YBX1/PRKAA1/MAPK8/SRSF1/ARID1A/CCNE2/BID/CHEK2/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/AXL/CAV1/CASP3/CCNE1/TFF1/YAP1/ASNS/EIF4E/EIF4EBP1/FOXM1/PRDX1/PIK3CA/MAPK1/RET/RPS6KB1/GAB2/WWTR1/ANLN/DIABLO/NEK7/RICTOR/ERCC1/INPP4B/TP53BP1/BRAF/LCN2/RAD50/NOTCH1/RAD51/BECN1/EEF2K/AKT1S1/ANXA7/SMAD4/XRCC1/DIRAS3/RBM15/VHL/TSC1/ACVRL1/XBP1/PDK1/RBM3/PARK7/ERBB2/SMAD1/CASP9/CDKN2A/MAPK9/SMAD3/MAPK3
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/199
## GO:0003824 GO:0003824           catalytic activity    92    92/199
## GO:0005198 GO:0005198 structural molecule activity     8     8/199
## GO:0005215 GO:0005215         transporter activity     5     5/199
## GO:0005488 GO:0005488                      binding   196   196/199
## GO:0009055 GO:0009055   electron transfer activity     0     0/199
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    MYH11/MYH9
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      DIRAS3/MAPK14/ERBB2/G6PD/KDR/MAPK8/PRKCD/RPS6KA1/ASNS/SRC/AKT2/AKT3/AKT1/RAD51/MET/NRAS/IGF1R/PTEN/PIK3CA/CDKN1A/RAF1/AXL/ATM/MAPK1/NEK7/BIRC2/MAPK9/XRCC5/CASP7/BAP1/STK11/ADAR/BRCA2/EGFR/CCNE1/FASN/EEF2/MTOR/MAPK3/INPP4B/PCNA/ACVRL1/CHEK2/PRKCA/CHEK1/ACACA/GSK3B/GSK3A/PTK2/PARK7/TGM2/RAB11B/RAB11A/ACACB/CDK1/EEF2K/LCK/XRCC1/RAD50/VHL/CCND1/PIK3R1/PRDX1/NCOA3/GAPDH/TYMS/MSH6/KIT/BRAF/TUBA1B/ARAF/RPS6KB1/KRAS/PDK1/MAP2K1/PRKAA1/XIAP/EZH2/RAB25/ERCC1/HSPA1A/PTGS2/PARP1/CASP9/CASP3/NAPSA/SYK/SETD2/MSH2/CASP8/RET/IDH3A
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                FN1/CLDN7/RPS6/CTNNA1/TUBA1B/MYH11/KRT5/COL6A1
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    IGF1R/BAK1/BCL2/BAX/KCNJ13
## GO:0005488 DIRAS3/MAPK14/YAP1/CDKN1B/ERBB2/G6PD/KDR/ERBB3/AKT1S1/MAPK8/PRKCD/EIF4EBP1/IGFBP2/RPS6KA1/FN1/BCL2L11/ASNS/SRC/AKT2/AKT3/AKT1/CDH2/RAD51/MET/NRAS/TP53/CLDN7/IGF1R/RBM15/BECN1/RB1/ESR1/PTEN/PIK3CA/CDKN1A/GATA3/PEA15/SMAD3/RAF1/EIF4G1/AXL/ATM/MAPK1/TP53BP1/NEK7/BIRC2/NOTCH1/MAPK9/YWHAZ/VASP/XRCC5/ITGA2/CASP7/BAP1/STK11/ADAR/BRCA2/EGFR/CCNE1/FASN/EEF2/MTOR/SERPINE1/YWHAE/MAPK3/INPP4B/PCNA/ACVRL1/TSC1/CHEK2/BAK1/SMAD4/TSC2/PECAM1/CTNNB1/LCN2/YBX1/RPS6/NFE2L2/MAPT/CDH3/PRKCA/ANLN/PDCD4/SHC1/TTF1/SMAD1/STMN1/RICTOR/JUN/EIF4E/CHEK1/CDH1/STAT3/ACACA/WWTR1/FOXO3/GSK3B/GSK3A/PTK2/PARK7/TGM2/BCL2/PRRT2/RAB11B/RAB11A/ETS1/ACACB/CDK1/MS4A1/EEF2K/LCK/KEAP1/E2F1/XRCC1/CTNNA1/NFKB1/RAD50/MYC/IRS1/VHL/CCND1/CAV1/PIK3R1/AR/PRDX1/NCOA3/XBP1/BCL2L1/TP63/GAPDH/TYMS/MSH6/KIT/CCNB1/BRAF/TUBA1B/MYH11/NF2/DVL3/PTCH1/NRG1/KRT5/ARAF/RPS6KB1/MYH9/NOTCH3/KRAS/PDK1/MAP2K1/PRKAA1/FOXM1/COL6A1/STAT5A/XIAP/NDRG1/PGR/GAB2/YWHAB/PIK3R2/ANXA1/EZH2/RAB25/ERCC1/BAX/BID/ARID1A/TFRC/HSPA1A/PXN/CCNE2/PTGS2/ERRFI1/SYP/PARP1/RBM3/CASP9/CASP3/NAPSA/SYK/RPTOR/SETD2/ANXA7/BAD/SNAI2/MSH2/CASP8/PREX1/RET/TFF1/CDKN2A/DIABLO/MACC1/IDH3A/SQSTM1/SRSF1
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    55    55/199
## GO:0002376 GO:0002376 immune system process    93    93/199
## GO:0008152 GO:0008152     metabolic process   174   174/199
## GO:0009987 GO:0009987      cellular process   197   197/199
## GO:0016032 GO:0016032         viral process    16    16/199
## GO:0022414 GO:0022414  reproductive process    54    54/199
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             DIRAS3/CDKN1B/KDR/IGFBP2/BCL2L11/SRC/AKT1/RAD51/IGF1R/RB1/ESR1/PTEN/PIK3CA/GATA3/AXL/ATM/NOTCH1/ITGA2/STK11/BRCA2/EGFR/CCNE1/MTOR/PCNA/BAK1/SMAD4/CTNNB1/SMAD1/STAT3/FOXO3/GSK3A/PARK7/BCL2/CDK1/CTNNA1/RAD50/AR/BCL2L1/TP63/MSH6/KIT/PTCH1/RPS6KB1/MYH9/COL6A1/PGR/ERCC1/BAX/CCNE2/PTGS2/ERRFI1/PARP1/CASP3/MSH2/CASP8
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     MAPK14/ERBB2/G6PD/MAPK8/PRKCD/IGFBP2/FN1/BCL2L11/SRC/AKT1/TP53/IGF1R/RBM15/BECN1/RB1/ESR1/PIK3CA/CDKN1A/GATA3/SMAD3/RAF1/AXL/ATM/MAPK1/TP53BP1/NEK7/BIRC2/NOTCH1/MAPK9/YWHAZ/XRCC5/ITGA2/BAP1/STK11/ADAR/MTOR/SERPINE1/YWHAE/MAPK3/TSC1/BAK1/PECAM1/CTNNB1/LCN2/NFE2L2/MAPT/PRKCA/STAT3/FOXO3/PTK2/PARK7/BCL2/ETS1/MS4A1/LCK/NFKB1/MYC/CAV1/PIK3R1/PRDX1/XBP1/GAPDH/MSH6/KIT/BRAF/RPS6KB1/MYH9/MAP2K1/XIAP/NDRG1/GAB2/PIK3R2/ANXA1/EZH2/ERCC1/BAX/BID/ARID1A/TFRC/HSPA1A/PARP1/CASP3/SYK/RPTOR/SETD2/BAD/SNAI2/MSH2/CASP8/PREX1/RET/CHGA/SQSTM1
## GO:0008152                                                                                                                                        DIRAS3/MAPK14/YAP1/CDKN1B/ERBB2/G6PD/KDR/ERBB3/AKT1S1/MAPK8/PRKCD/EIF4EBP1/RPS6KA1/FN1/ASNS/SRC/AKT2/AKT3/AKT1/RAD51/MET/TP53/IGF1R/RBM15/BECN1/RB1/ESR1/PTEN/PIK3CA/CDKN1A/GATA3/SMAD3/RAF1/EIF4G1/AXL/ATM/MAPK1/TP53BP1/NEK7/BIRC2/NOTCH1/MAPK9/YWHAZ/XRCC5/ITGA2/CASP7/BAP1/STK11/ADAR/BRCA2/EGFR/CCNE1/FASN/EEF2/MTOR/SERPINE1/YWHAE/MAPK3/INPP4B/PCNA/ACVRL1/TSC1/CHEK2/BAK1/SMAD4/TSC2/PECAM1/CTNNB1/LCN2/YBX1/RPS6/NFE2L2/MAPT/CDH3/PRKCA/PDCD4/SHC1/TTF1/SMAD1/RICTOR/JUN/EIF4E/CHEK1/CDH1/STAT3/ACACA/WWTR1/FOXO3/GSK3B/GSK3A/PTK2/PARK7/TGM2/BCL2/RAB11B/ETS1/ACACB/CDK1/EEF2K/LCK/KEAP1/E2F1/XRCC1/NFKB1/RAD50/MYC/IRS1/VHL/CCND1/CAV1/PIK3R1/AR/PRDX1/NCOA3/XBP1/TP63/GAPDH/TYMS/MSH6/KIT/CCNB1/BRAF/NF2/DVL3/PTCH1/NRG1/ARAF/RPS6KB1/MYH9/NOTCH3/KRAS/PDK1/MAP2K1/PRKAA1/FOXM1/COL6A1/STAT5A/XIAP/PGR/YWHAB/PIK3R2/ANXA1/EZH2/ERCC1/BAX/BID/ARID1A/TFRC/HSPA1A/CCNE2/PTGS2/ERRFI1/PARP1/RBM3/CASP9/CASP3/NAPSA/SYK/RPTOR/SETD2/ANXA7/BAD/SNAI2/MSH2/CASP8/PREX1/RET/TFF1/CDKN2A/DIABLO/MACC1/IDH3A/SQSTM1/SRSF1
## GO:0009987 DIRAS3/MAPK14/YAP1/CDKN1B/ERBB2/G6PD/KDR/ERBB3/AKT1S1/MAPK8/PRKCD/EIF4EBP1/IGFBP2/RPS6KA1/FN1/BCL2L11/ASNS/SRC/AKT2/AKT3/AKT1/CDH2/RAD51/MET/NRAS/TP53/CLDN7/IGF1R/RBM15/BECN1/RB1/ESR1/PTEN/PIK3CA/CDKN1A/GATA3/PEA15/SMAD3/RAF1/EIF4G1/AXL/ATM/MAPK1/TP53BP1/NEK7/BIRC2/NOTCH1/MAPK9/YWHAZ/VASP/XRCC5/ITGA2/CASP7/BAP1/STK11/ADAR/BRCA2/EGFR/CCNE1/FASN/EEF2/MTOR/SERPINE1/YWHAE/MAPK3/INPP4B/PCNA/ACVRL1/TSC1/CHEK2/BAK1/SMAD4/TSC2/PECAM1/CTNNB1/LCN2/YBX1/RPS6/NFE2L2/MAPT/CDH3/PRKCA/ANLN/PDCD4/SHC1/TTF1/SMAD1/STMN1/RICTOR/JUN/EIF4E/CHEK1/CDH1/STAT3/ACACA/WWTR1/FOXO3/GSK3B/GSK3A/PTK2/PARK7/TGM2/BCL2/PRRT2/RAB11B/RAB11A/ETS1/ACACB/CDK1/MS4A1/EEF2K/LCK/KEAP1/E2F1/XRCC1/CTNNA1/NFKB1/RAD50/MYC/IRS1/VHL/CCND1/CAV1/PIK3R1/AR/PRDX1/NCOA3/XBP1/BCL2L1/TP63/GAPDH/TYMS/MSH6/KIT/CCNB1/BRAF/TUBA1B/MYH11/NF2/DVL3/PTCH1/NRG1/KRT5/ARAF/RPS6KB1/MYH9/NOTCH3/KRAS/PDK1/MAP2K1/PRKAA1/FOXM1/COL6A1/STAT5A/XIAP/NDRG1/PGR/GAB2/YWHAB/PIK3R2/ANXA1/EZH2/RAB25/ERCC1/BAX/BID/ARID1A/TFRC/HSPA1A/PXN/CCNE2/PTGS2/ERRFI1/SYP/PARP1/RBM3/CASP9/CASP3/SYK/RPTOR/SETD2/ANXA7/BAD/SNAI2/MSH2/CASP8/PREX1/RET/TFF1/CDKN2A/DIABLO/MACC1/CHGA/IDH3A/SQSTM1/KCNJ13/SRSF1
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AKT1/TP53/BECN1/AXL/NOTCH1/ITGA2/ADAR/EGFR/JUN/GSK3B/GSK3A/BCL2/CDK1/CAV1/TFRC/HSPA1A
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   DIRAS3/CDKN1B/KDR/IGFBP2/BCL2L11/SRC/AKT1/RAD51/IGF1R/RB1/ESR1/PTEN/PIK3CA/GATA3/AXL/ATM/NOTCH1/ITGA2/STK11/BRCA2/EGFR/CCNE1/MTOR/PCNA/BAK1/SMAD4/CTNNB1/SMAD1/FOXO3/GSK3A/PARK7/BCL2/CDK1/CTNNA1/RAD50/AR/BCL2L1/TP63/MSH6/KIT/PTCH1/RPS6KB1/MYH9/COL6A1/PGR/ERCC1/BAX/CCNE2/PTGS2/ERRFI1/PARP1/CASP3/MSH2/CASP8
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex   129   129/199
## GO:0044423 GO:0044423           virion component     0     0/199
## GO:0110165 GO:0110165 cellular anatomical entity   198   198/199
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               geneID
## GO:0032991                                                                                                                                                                                                                                                                                                                                                                                                           YAP1/CDKN1B/ERBB2/KDR/ERBB3/AKT1S1/FN1/BCL2L11/AKT1/CDH2/RAD51/MET/TP53/IGF1R/RBM15/BECN1/RB1/ESR1/PIK3CA/CDKN1A/GATA3/PEA15/SMAD3/EIF4G1/AXL/ATM/TP53BP1/BIRC2/NOTCH1/XRCC5/ITGA2/BAP1/STK11/ADAR/BRCA2/EGFR/CCNE1/EEF2/MTOR/SERPINE1/PCNA/ACVRL1/TSC1/BAK1/SMAD4/TSC2/PECAM1/CTNNB1/YBX1/RPS6/NFE2L2/MAPT/CDH3/PRKCA/SHC1/SMAD1/RICTOR/JUN/EIF4E/CHEK1/CDH1/STAT3/WWTR1/FOXO3/GSK3B/GSK3A/PARK7/TGM2/BCL2/RAB11A/ETS1/ACACB/CDK1/KEAP1/E2F1/XRCC1/CTNNA1/NFKB1/RAD50/MYC/IRS1/CCND1/CAV1/PIK3R1/AR/NCOA3/XBP1/BCL2L1/TP63/GAPDH/MSH6/KIT/CCNB1/MYH11/DVL3/MYH9/NOTCH3/PDK1/PRKAA1/FOXM1/COL6A1/STAT5A/PGR/PIK3R2/EZH2/ERCC1/BAX/ARID1A/TFRC/HSPA1A/PXN/CCNE2/PTGS2/PARP1/RBM3/CASP9/CASP3/SYK/RPTOR/BAD/SNAI2/MSH2/CASP8/RET/CDKN2A/DIABLO/IDH3A/KCNJ13/SRSF1
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
## GO:0110165 DIRAS3/MAPK14/YAP1/CDKN1B/ERBB2/G6PD/KDR/ERBB3/AKT1S1/MAPK8/PRKCD/EIF4EBP1/IGFBP2/RPS6KA1/FN1/BCL2L11/ASNS/SRC/AKT2/AKT3/AKT1/CDH2/RAD51/MET/NRAS/TP53/CLDN7/IGF1R/RBM15/BECN1/RB1/ESR1/PTEN/PIK3CA/CDKN1A/GATA3/PEA15/SMAD3/RAF1/EIF4G1/AXL/ATM/MAPK1/TP53BP1/NEK7/BIRC2/NOTCH1/MAPK9/YWHAZ/VASP/XRCC5/ITGA2/CASP7/BAP1/STK11/ADAR/BRCA2/EGFR/CCNE1/FASN/EEF2/MTOR/SERPINE1/YWHAE/MAPK3/INPP4B/PCNA/ACVRL1/TSC1/CHEK2/BAK1/SMAD4/TSC2/PECAM1/CTNNB1/LCN2/YBX1/RPS6/NFE2L2/MAPT/CDH3/PRKCA/ANLN/PDCD4/SHC1/TTF1/SMAD1/STMN1/RICTOR/JUN/EIF4E/CHEK1/CDH1/STAT3/ACACA/WWTR1/FOXO3/GSK3B/GSK3A/PTK2/PARK7/TGM2/BCL2/PRRT2/RAB11B/RAB11A/ETS1/ACACB/CDK1/MS4A1/EEF2K/LCK/KEAP1/E2F1/XRCC1/CTNNA1/NFKB1/RAD50/MYC/IRS1/VHL/CCND1/CAV1/PIK3R1/AR/PRDX1/NCOA3/XBP1/BCL2L1/TP63/GAPDH/TYMS/MSH6/KIT/CCNB1/BRAF/TUBA1B/MYH11/NF2/DVL3/PTCH1/NRG1/KRT5/ARAF/RPS6KB1/MYH9/NOTCH3/KRAS/PDK1/MAP2K1/PRKAA1/FOXM1/COL6A1/STAT5A/XIAP/NDRG1/PGR/GAB2/YWHAB/PIK3R2/ANXA1/EZH2/RAB25/ERCC1/BAX/BID/ARID1A/TFRC/HSPA1A/PXN/CCNE2/PTGS2/ERRFI1/SYP/PARP1/RBM3/CASP9/CASP3/NAPSA/SYK/RPTOR/SETD2/ANXA7/BAD/SNAI2/MSH2/CASP8/PREX1/RET/TFF1/CDKN2A/DIABLO/MACC1/CHGA/IDH3A/SQSTM1/KCNJ13/SRSF1
barplot(ggo_MF[[1]], title = "groupGO, Molecular Function, \n All Selected Genes, Logistic Regression Glmnet")

barplot(ggo_MF[[2]], title = "groupGO, Molecular Function, \n All Selected Genes, Cox Regression Glmnet")

barplot(ggo_MF[[3]], title = "groupGO, Molecular Function, \n All Selected Genes, Squeezy")

barplot(ggo_MF[[4]], title = "groupGO, Molecular Function, \n All Selected Genes, Globaltest")

barplot(ggo_MF[[5]], title = "groupGO, Molecular Function, \n All Selected Genes, FABIA")

barplot(ggo_MF[[6]], title = "groupGO, Molecular Function, \n All Selected Genes, MOFA")

barplot(ggo_MF[[7]], title = "groupGO, Molecular Function, \n All Selected Genes, MFA")

barplot(ggo_MF[[8]], title = "groupGO, Molecular Function, \n All Selected Genes, 20 FABIA Ensemble")

barplot(ggo_MF[[9]], title = "groupGO, Molecular Function, \n All Selected Genes, FABIA & MOFA Ensemble")

barplot(ggo_MF[[10]], title = "groupGO, Molecular Function, \n All Selected Genes, Gaussian Graphical Models")

barplot(ggo_MF[[11]], title = "groupGO, Molecular Function, \n All Genes in ACC Dataset")

barplot(ggo_BP[[1]], title = "groupGO, Biological Process, \n All Selected Genes, Logistic Regression Glmnet")

barplot(ggo_BP[[2]], title = "groupGO, Biological Process, \n All Selected Genes, Cox Regression Glmnet")

barplot(ggo_BP[[3]], title = "groupGO, Biological Process, \n All Selected Genes, Squeezy")

barplot(ggo_BP[[4]], title = "groupGO, Biological Process, \n All Selected Genes, Globaltest")

barplot(ggo_BP[[5]], title = "groupGO, Biological Process, \n All Selected Genes, FABIA")

barplot(ggo_BP[[6]], title = "groupGO, Biological Process, \n All Selected Genes, MOFA")

barplot(ggo_BP[[7]], title = "groupGO, Biological Process, \n All Selected Genes, MFA")

barplot(ggo_BP[[8]], title = "groupGO, Biological Process, \n All Selected Genes, 20 FABIA Ensemble")

barplot(ggo_BP[[9]], title = "groupGO, Biological Process, \n All Selected Genes, FABIA & MOFA Ensemble")

barplot(ggo_BP[[10]], title = "groupGO, Biological Process, \n All Selected Genes, Gaussian Graphical Models")

barplot(ggo_BP[[11]], title = "groupGO, Biological Process, \n All Genes in ACC Dataset")

barplot(ggo_CC[[1]], title = "groupGO, Cellular Component, \n All Selected Genes, Logistic Regression Glmnet")

barplot(ggo_CC[[2]], title = "groupGO, Cellular Component, \n All Selected Genes, Cox Regression Glmnet")

barplot(ggo_CC[[3]], title = "groupGO, Cellular Component, \n All Selected Genes, Squeezy")

barplot(ggo_CC[[4]], title = "groupGO, Cellular Component, \n All Selected Genes, Globaltest")

barplot(ggo_CC[[5]], title = "groupGO, Cellular Component, \n All Selected Genes, FABIA")

barplot(ggo_CC[[6]], title = "groupGO, Cellular Component, \n All Selected Genes, MOFA")

barplot(ggo_CC[[7]], title = "groupGO, Cellular Component, \n All Selected Genes, MFA")

barplot(ggo_CC[[8]], title = "groupGO, Cellular Component, \n All Selected Genes, 20 FABIA Ensemble")

barplot(ggo_CC[[9]], title = "groupGO, Cellular Component, \n All Selected Genes, FABIA & MOFA Ensemble")

barplot(ggo_CC[[10]], title = "groupGO, Cellular Component, \n All Selected Genes, Gaussian Graphical Models")

barplot(ggo_CC[[11]], title = "groupGO, Cellular Component, \n All Genes in ACC Dataset")

B. GO Over-Representation

ego_MF <- list()#GO enrichment of a geneset for Molecular Function
ego_BP <- list()#GO enrichment of a geneset for Biological Process
ego_CC <- list()#GO enrichment of a geneset for Cellular Component


for(z in 1:length(geneNames)){
  print(z)
  input <- geneNames[[z]]
  ego_MF[[z]] <- enrichGO(
    gene          = input,
    OrgDb         = org.Hs.eg.db,
    ont           = "MF",
    pAdjustMethod = "BH",
    keyType="SYMBOL",
    pvalueCutoff  = 0.05,
    qvalueCutoff  = 0.05,
    minGSSize     = 2,
    readable      = TRUE)
  
  ego_BP[[z]] <- enrichGO(
    gene          = input,
    OrgDb         = org.Hs.eg.db,
    ont           = "BP",
    pAdjustMethod = "BH",
    keyType="SYMBOL",
    pvalueCutoff  = 0.05,
    qvalueCutoff  = 0.05,
    minGSSize     = 2,
    readable      = TRUE)
  
  ego_CC[[z]] <- enrichGO(
    gene          = input,
    OrgDb         = org.Hs.eg.db,
    ont           = "CC",
    pAdjustMethod = "BH",
    keyType="SYMBOL",
    pvalueCutoff  = 0.05,
    qvalueCutoff  = 0.05,
    minGSSize     = 2,
    readable      = TRUE)
}
## [1] 1
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 7
## [1] 8
## [1] 9
## [1] 10
## [1] 11
for(z in 1:length(geneNames)){
  print(head(ego_MF[[z]]))
  print(head(ego_BP[[z]]))
  print(head(ego_CC[[z]]))
}
##                    ID                              Description GeneRatio
## GO:0140297 GO:0140297 DNA-binding transcription factor binding     17/92
## GO:0004674 GO:0004674 protein serine/threonine kinase activity     16/92
## GO:0045296 GO:0045296                         cadherin binding     14/92
## GO:0043125 GO:0043125            ErbB-3 class receptor binding      4/92
## GO:0106310 GO:0106310           protein serine kinase activity     14/92
## GO:0031625 GO:0031625         ubiquitin protein ligase binding     13/92
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0140297 478/18522 1.787075e-10 6.527056e-08 3.185892e-08
## GO:0004674 427/18522 3.057169e-10 6.527056e-08 3.185892e-08
## GO:0045296 333/18522 9.998688e-10 1.423147e-07 6.946457e-08
## GO:0043125   5/18522 2.839009e-09 2.515155e-07 1.227661e-07
## GO:0106310 363/18522 3.038054e-09 2.515155e-07 1.227661e-07
## GO:0031625 305/18522 3.534176e-09 2.515155e-07 1.227661e-07
##                                                                                                  geneID
## GO:0140297      AR/RB1/E2F1/MYC/GSK3B/MAPK3/JUN/TP53/CTNNB1/YAP1/PCNA/SMAD4/ETS1/BCL2/YWHAZ/STAT3/PARP1
## GO:0004674 AKT1/CHEK1/CDK1/RAF1/AKT3/GSK3B/MAPK1/STK11/MAPK3/ACVRL1/EEF2K/PRKAA1/ATM/MAPK9/PIK3CA/PRKCA
## GO:0045296            FASN/EEF2/KDR/RAB11B/YWHAB/CTNNB1/CDH2/NOTCH3/ANXA1/YWHAZ/PRDX1/MYH9/CTNNA1/NDRG1
## GO:0043125                                                                      ERBB2/PIK3R1/ERBB3/NRG1
## GO:0106310              AKT1/CHEK1/CDK1/RAF1/AKT3/GSK3B/MAPK1/STK11/MAPK3/PRKAA1/ATM/MAPK9/PIK3CA/PRKCA
## GO:0031625                  RB1/TUBA1B/BECN1/ERBB3/GSK3B/CDKN1A/JUN/TP53/CTNNB1/SQSTM1/BCL2/YWHAZ/PARP1
##            Count
## GO:0140297    17
## GO:0004674    16
## GO:0045296    14
## GO:0043125     4
## GO:0106310    14
## GO:0031625    13
##                    ID                                 Description GeneRatio
## GO:0048732 GO:0048732                           gland development     25/93
## GO:0097193 GO:0097193       intrinsic apoptotic signaling pathway     22/93
## GO:0050673 GO:0050673               epithelial cell proliferation     24/93
## GO:0071214 GO:0071214       cellular response to abiotic stimulus     21/93
## GO:0104004 GO:0104004 cellular response to environmental stimulus     21/93
## GO:0051402 GO:0051402                    neuron apoptotic process     20/93
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0048732 449/18888 8.816508e-20 3.546881e-16 1.522008e-16
## GO:0097193 319/18888 2.020410e-19 4.064054e-16 1.743933e-16
## GO:0050673 482/18888 7.053999e-18 7.922136e-15 3.399480e-15
## GO:0071214 334/18888 9.846055e-18 7.922136e-15 3.399480e-15
## GO:0104004 334/18888 9.846055e-18 7.922136e-15 3.399480e-15
## GO:0051402 292/18888 1.223043e-17 8.200501e-15 3.518930e-15
##                                                                                                                                              geneID
## GO:0048732 NOTCH1/CCND1/AKT1/AR/FASN/SRSF1/BCL2L11/RAF1/XBP1/ITGA2/MAPK1/STK11/MAPK3/BAX/CTNNB1/ATM/PCNA/SMAD4/NRG1/PGR/SNAI2/BCL2/PIK3CA/TGM2/TYMS
## GO:0097193              AKT1/BCL2L1/PIK3R1/BECN1/E2F1/MYC/BCL2L11/XBP1/MSH6/CDKN1A/STK11/BAX/CASP9/PDK1/TP53/CTNNB1/ATM/SNAI2/BCL2/BAK1/CASP3/PARP1
## GO:0050673        NOTCH1/ERBB2/CCND1/AKT1/BCL2L1/AR/RB1/MYC/RAF1/XBP1/AKT3/KDR/CDKN1A/MAPK1/STK11/ACVRL1/BAX/CTNNB1/YAP1/PGR/SNAI2/BAK1/STAT3/PRKCA
## GO:0071214                 BCL2L1/PIK3R1/CHEK1/IGF1R/MYC/ITGA2/CDKN1A/STK11/MAPK3/RAB11B/BAX/CASP9/TP53/YAP1/ATM/PCNA/SNAI2/BAK1/CASP3/PARP1/PIK3CA
## GO:0104004                 BCL2L1/PIK3R1/CHEK1/IGF1R/MYC/ITGA2/CDKN1A/STK11/MAPK3/RAB11B/BAX/CASP9/TP53/YAP1/ATM/PCNA/SNAI2/BAK1/CASP3/PARP1/PIK3CA
## GO:0051402                           KRAS/CCND1/BCL2L1/RB1/XIAP/ERBB3/FOXO3/BCL2L11/GSK3B/KDR/BAX/CASP9/TP53/CTNNB1/ATM/BCL2/AXL/CASP3/PARP1/PIK3CA
##            Count
## GO:0048732    25
## GO:0097193    22
## GO:0050673    24
## GO:0071214    21
## GO:0104004    21
## GO:0051402    20
##                    ID
## GO:0097136 GO:0097136
## GO:0061695 GO:0061695
## GO:1902911 GO:1902911
## GO:0005741 GO:0005741
## GO:0031968 GO:0031968
## GO:0019867 GO:0019867
##                                                               Description
## GO:0097136                                   Bcl-2 family protein complex
## GO:0061695 transferase complex, transferring phosphorus-containing groups
## GO:1902911                                         protein kinase complex
## GO:0005741                                   mitochondrial outer membrane
## GO:0031968                                       organelle outer membrane
## GO:0019867                                                 outer membrane
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0097136      5/93  10/19894 4.953734e-10 1.491074e-07 8.864577e-08
## GO:0061695     12/93 308/19894 2.083761e-08 3.136061e-06 1.864418e-06
## GO:1902911      9/93 150/19894 3.472195e-08 3.483769e-06 2.071134e-06
## GO:0005741     10/93 219/19894 7.752987e-08 5.834123e-06 3.468441e-06
## GO:0031968     10/93 248/19894 2.467527e-07 1.333202e-05 7.926011e-06
## GO:0019867     10/93 250/19894 2.657545e-07 1.333202e-05 7.926011e-06
##                                                                            geneID
## GO:0097136                                           BCL2L1/BCL2L11/BAX/BCL2/BAK1
## GO:0061695 CCND1/RB1/PIK3R1/IGF1R/CDK1/BECN1/CDKN1A/STK11/PRKAA1/PCNA/PIK3CA/IRS1
## GO:1902911                     CCND1/RB1/IGF1R/CDK1/CDKN1A/STK11/PRKAA1/PCNA/IRS1
## GO:0005741                 KRAS/BCL2L1/BECN1/FOXO3/BCL2L11/RAF1/BAX/PGR/BCL2/BAK1
## GO:0031968                 KRAS/BCL2L1/BECN1/FOXO3/BCL2L11/RAF1/BAX/PGR/BCL2/BAK1
## GO:0019867                 KRAS/BCL2L1/BECN1/FOXO3/BCL2L11/RAF1/BAX/PGR/BCL2/BAK1
##            Count
## GO:0097136     5
## GO:0061695    12
## GO:1902911     9
## GO:0005741    10
## GO:0031968    10
## GO:0019867    10
##                    ID                                       Description
## GO:0004674 GO:0004674          protein serine/threonine kinase activity
## GO:0106310 GO:0106310                    protein serine kinase activity
## GO:0004707 GO:0004707                               MAP kinase activity
## GO:0035173 GO:0035173                           histone kinase activity
## GO:0004712 GO:0004712 protein serine/threonine/tyrosine kinase activity
## GO:0030544 GO:0030544                             Hsp70 protein binding
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0004674      7/18 427/18522 8.420101e-08 9.430513e-06 4.697530e-06
## GO:0106310      6/18 363/18522 8.271790e-07 4.632202e-05 2.307394e-05
## GO:0004707      2/18  16/18522 1.061813e-04 3.964103e-03 1.974600e-03
## GO:0035173      2/18  23/18522 2.229651e-04 6.243024e-03 3.109777e-03
## GO:0004712      2/18  43/18522 7.866924e-04 1.762191e-02 8.777831e-03
## GO:0030544      2/18  51/18522 1.105678e-03 2.063932e-02 1.028086e-02
##                                             geneID Count
## GO:0004674 AKT1/MAPK9/MAPK3/CHEK1/CDK1/EEF2K/PRKCD     7
## GO:0106310       AKT1/MAPK9/MAPK3/CHEK1/CDK1/PRKCD     6
## GO:0004707                             MAPK9/MAPK3     2
## GO:0035173                              CHEK1/CDK1     2
## GO:0004712                              AKT1/MAPK9     2
## GO:0030544                               CDK1/TFRC     2
##                    ID                                            Description
## GO:0051054 GO:0051054           positive regulation of DNA metabolic process
## GO:1900182 GO:1900182 positive regulation of protein localization to nucleus
## GO:0018105 GO:0018105                        peptidyl-serine phosphorylation
## GO:1900180 GO:1900180          regulation of protein localization to nucleus
## GO:0018209 GO:0018209                           peptidyl-serine modification
## GO:0034614 GO:0034614           cellular response to reactive oxygen species
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0051054      7/18 301/18888 6.666566e-09 1.043318e-05 4.329759e-06
## GO:1900182      5/18  94/18888 2.231785e-08 1.746372e-05 7.247428e-06
## GO:0018105      6/18 282/18888 1.676932e-07 6.086976e-05 2.526090e-05
## GO:1900180      5/18 144/18888 1.900209e-07 6.086976e-05 2.526090e-05
## GO:0018209      6/18 294/18888 2.143839e-07 6.086976e-05 2.526090e-05
## GO:0034614      5/18 151/18888 2.407405e-07 6.086976e-05 2.526090e-05
##                                            geneID Count
## GO:0051054 AKT1/RAD51/MAPK3/CDK1/FOXM1/TFRC/PRKCD     7
## GO:1900182             AKT1/CDK1/TFRC/PRKCD/WWTR1     5
## GO:0018105         AKT1/MAPK9/CDK1/RET/TFRC/PRKCD     6
## GO:1900180             AKT1/CDK1/TFRC/PRKCD/WWTR1     5
## GO:0018209         AKT1/MAPK9/CDK1/RET/TFRC/PRKCD     6
## GO:0034614            AKT1/MAPK9/MAPK3/CDK1/PRKCD     5
##                    ID                  Description GeneRatio   BgRatio
## GO:0000781 GO:0000781 chromosome, telomeric region      3/18 173/19894
## GO:0005769 GO:0005769               early endosome      4/18 428/19894
## GO:0016323 GO:0016323  basolateral plasma membrane      3/18 255/19894
## GO:0016328 GO:0016328      lateral plasma membrane      2/18  68/19894
## GO:0097122 GO:0097122       cyclin A2-CDK1 complex      1/18   2/19894
## GO:0097125 GO:0097125       cyclin B1-CDK1 complex      1/18   2/19894
##                  pvalue   p.adjust     qvalue               geneID Count
## GO:0000781 0.0004790537 0.02601912 0.02015384     RAD51/CHEK1/CDK1     3
## GO:0005769 0.0005087747 0.02601912 0.02015384 MAPK3/RET/TFRC/ANXA1     4
## GO:0016323 0.0014728354 0.02601912 0.02015384     TFRC/CLDN7/ANXA1     3
## GO:0016328 0.0017001738 0.02601912 0.02015384          CLDN7/ANXA1     2
## GO:0097122 0.0018088176 0.02601912 0.02015384                 CDK1     1
## GO:0097125 0.0018088176 0.02601912 0.02015384                 CDK1     1
##                    ID
## GO:0004314 GO:0004314
## GO:0004315 GO:0004315
## GO:0004316 GO:0004316
## GO:0004345 GO:0004345
## GO:0004998 GO:0004998
## GO:0008659 GO:0008659
##                                                                    Description
## GO:0004314                [acyl-carrier-protein] S-malonyltransferase activity
## GO:0004315                  3-oxoacyl-[acyl-carrier-protein] synthase activity
## GO:0004316         3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
## GO:0004345                          glucose-6-phosphate dehydrogenase activity
## GO:0004998                                       transferrin receptor activity
## GO:0008659 (3R)-3-hydroxymyristoyl-[acyl-carrier-protein] dehydratase activity
##            GeneRatio BgRatio       pvalue    p.adjust       qvalue geneID Count
## GO:0004314       1/6 2/18522 0.0006477907 0.003240407 0.0006541557   FASN     1
## GO:0004315       1/6 2/18522 0.0006477907 0.003240407 0.0006541557   FASN     1
## GO:0004316       1/6 2/18522 0.0006477907 0.003240407 0.0006541557   FASN     1
## GO:0004345       1/6 2/18522 0.0006477907 0.003240407 0.0006541557   G6PD     1
## GO:0004998       1/6 2/18522 0.0006477907 0.003240407 0.0006541557   TFRC     1
## GO:0008659       1/6 2/18522 0.0006477907 0.003240407 0.0006541557   FASN     1
##                    ID
## GO:0010039 GO:0010039
## GO:0044403 GO:0044403
## GO:0006953 GO:0006953
## GO:0002204 GO:0002204
## GO:0002208 GO:0002208
## GO:0045190 GO:0045190
##                                                                          Description
## GO:0010039                                                      response to iron ion
## GO:0044403                      biological process involved in symbiotic interaction
## GO:0006953                                                      acute-phase response
## GO:0002204 somatic recombination of immunoglobulin genes involved in immune response
## GO:0002208    somatic diversification of immunoglobulins involved in immune response
## GO:0045190                                                         isotype switching
##            GeneRatio   BgRatio       pvalue   p.adjust      qvalue
## GO:0010039       2/6  28/18888 3.167154e-05 0.00792854 0.003156436
## GO:0044403       3/6 311/18888 8.523132e-05 0.00792854 0.003156436
## GO:0006953       2/6  47/18888 9.033104e-05 0.00792854 0.003156436
## GO:0002204       2/6  53/18888 1.150515e-04 0.00792854 0.003156436
## GO:0002208       2/6  53/18888 1.150515e-04 0.00792854 0.003156436
## GO:0045190       2/6  53/18888 1.150515e-04 0.00792854 0.003156436
##                   geneID Count
## GO:0010039     G6PD/TFRC     2
## GO:0044403 FN1/FASN/TFRC     3
## GO:0006953      FN1/TFRC     2
## GO:0002204     MSH6/TFRC     2
## GO:0002208     MSH6/TFRC     2
## GO:0045190     MSH6/TFRC     2
##                    ID         Description GeneRatio   BgRatio       pvalue
## GO:0042470 GO:0042470          melanosome       2/6 112/19894 0.0004642992
## GO:0048770 GO:0048770     pigment granule       2/6 112/19894 0.0004642992
## GO:0032301 GO:0032301   MutSalpha complex       1/6   2/19894 0.0006031211
## GO:0072562 GO:0072562 blood microparticle       2/6 144/19894 0.0007657506
## GO:0042587 GO:0042587    glycogen granule       1/6   6/19894 0.0018084541
## GO:0005577 GO:0005577  fibrinogen complex       1/6   8/19894 0.0024106661
##               p.adjust      qvalue    geneID Count
## GO:0042470 0.007466069 0.004030266 FASN/TFRC     2
## GO:0048770 0.007466069 0.004030266 FASN/TFRC     2
## GO:0032301 0.007466069 0.004030266      MSH6     1
## GO:0072562 0.007466069 0.004030266  FN1/TFRC     2
## GO:0042587 0.013430854 0.007250124      FASN     1
## GO:0005577 0.013430854 0.007250124       FN1     1
##                    ID                              Description GeneRatio
## GO:0140297 GO:0140297 DNA-binding transcription factor binding     16/84
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding     12/84
## GO:0031625 GO:0031625         ubiquitin protein ligase binding     11/84
## GO:0019207 GO:0019207                kinase regulator activity     10/84
## GO:0004674 GO:0004674 protein serine/threonine kinase activity     12/84
## GO:0043125 GO:0043125            ErbB-3 class receptor binding      3/84
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0140297 478/18522 3.841091e-10 1.582530e-07 7.196992e-08
## GO:0044389 324/18522 2.453935e-08 5.055106e-06 2.298950e-06
## GO:0031625 305/18522 1.287463e-07 1.768116e-05 8.040997e-06
## GO:0019207 270/18522 3.923050e-07 4.015344e-05 1.826089e-05
## GO:0004674 427/18522 4.872991e-07 4.015344e-05 1.826089e-05
## GO:0043125   5/18522 8.939725e-07 6.138611e-05 2.791704e-05
##                                                                                        geneID
## GO:0140297 RB1/ETS1/ARID1A/MYC/VHL/BCL2/TP53/YAP1/YWHAZ/STAT3/PARP1/CTNNB1/MAPK3/NCOA3/JUN/AR
## GO:0044389                 RB1/BID/CDKN1A/TUBA1B/ERBB3/BCL2/TP53/YWHAZ/PARP1/CTNNB1/JUN/CCNB1
## GO:0031625                       RB1/BID/CDKN1A/TUBA1B/ERBB3/BCL2/TP53/YWHAZ/PARP1/CTNNB1/JUN
## GO:0019207                     CDKN1A/CCND1/PIK3R1/ERBB3/CASP3/PIK3CA/YWHAB/AKT1/CCNB1/RICTOR
## GO:0004674            MAPK8/CHEK1/PIK3CA/PRKCA/MAPK3/RAF1/MAPK9/PRKAA1/AKT1/CDK1/EEF2K/ACVRL1
## GO:0043125                                                                 PIK3R1/ERBB3/ERBB2
##            Count
## GO:0140297    16
## GO:0044389    12
## GO:0031625    11
## GO:0019207    10
## GO:0004674    12
## GO:0043125     3
##                    ID                            Description GeneRatio
## GO:0009411 GO:0009411                         response to UV     16/85
## GO:0071496 GO:0071496 cellular response to external stimulus     19/85
## GO:0051402 GO:0051402               neuron apoptotic process     18/85
## GO:0097305 GO:0097305                    response to alcohol     17/85
## GO:0097193 GO:0097193  intrinsic apoptotic signaling pathway     18/85
## GO:0071214 GO:0071214  cellular response to abiotic stimulus     18/85
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0009411 154/18888 8.365458e-18 3.010728e-14 1.413322e-14
## GO:0071496 335/18888 4.735674e-16 8.521846e-13 4.000398e-13
## GO:0051402 292/18888 7.163738e-16 8.594098e-13 4.034316e-13
## GO:0097305 259/18888 1.759118e-15 1.582767e-12 7.429961e-13
## GO:0097193 319/18888 3.361536e-15 2.419634e-12 1.135845e-12
## GO:0071214 334/18888 7.468248e-15 3.839746e-12 1.802487e-12
##                                                                                                                  geneID
## GO:0009411                   MAPK8/CDKN1A/MYC/CCND1/PIK3R1/BCL2/BAK1/CASP3/TP53/PARP1/PRKAA1/AKT1/MSH6/CASP9/MSH2/ERCC1
## GO:0071496 MAPK8/CDKN1A/CHEK1/IGF1R/FOXO3/BCL2/AXL/BAK1/TP53/YWHAZ/MAPK3/EIF4G1/PRKAA1/TSC2/NFKB1/RICTOR/ASNS/XBP1/TSC1
## GO:0051402        RB1/XIAP/BID/CCND1/ERBB3/FOXO3/BCL2/AXL/CASP3/BCL2L11/TP53/PARP1/CTNNB1/PIK3CA/CASP9/BCL2L1/G6PD/MSH2
## GO:0097305       CDKN1A/IGF1R/FOXO3/ACACA/BAK1/PARP1/CTNNB1/TYMS/CLDN7/CTNNA1/EIF4G1/PRKAA1/AKT1/CDK1/RAD51/BCL2L1/G6PD
## GO:0097193        BID/CDKN1A/MYC/PIK3R1/BCL2/BAK1/CASP3/BCL2L11/TP53/PARP1/CTNNB1/PDK1/AKT1/MSH6/CASP9/BCL2L1/MSH2/XBP1
## GO:0071214   MAPK8/CDKN1A/MYC/PIK3R1/CHEK1/IGF1R/BAK1/CASP3/TP53/YAP1/PARP1/PIK3CA/MAPK3/RAD51/CASP9/BCL2L1/NFKB1/ERCC1
##            Count
## GO:0009411    16
## GO:0071496    19
## GO:0051402    18
## GO:0097305    17
## GO:0097193    18
## GO:0071214    18
##                    ID
## GO:0097136 GO:0097136
## GO:1902911 GO:1902911
## GO:0061695 GO:0061695
## GO:0000307 GO:0000307
## GO:0000781 GO:0000781
## GO:0032301 GO:0032301
##                                                               Description
## GO:0097136                                   Bcl-2 family protein complex
## GO:1902911                                         protein kinase complex
## GO:0061695 transferase complex, transferring phosphorus-containing groups
## GO:0000307             cyclin-dependent protein kinase holoenzyme complex
## GO:0000781                                   chromosome, telomeric region
## GO:0032301                                              MutSalpha complex
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0097136      4/85  10/19894 6.390734e-08 1.853313e-05 1.130151e-05
## GO:1902911      8/85 150/19894 2.551783e-07 3.700085e-05 2.256313e-05
## GO:0061695     10/85 308/19894 7.673741e-07 7.417950e-05 4.523468e-05
## GO:0000307      5/85  56/19894 4.068739e-06 2.949836e-04 1.798811e-04
## GO:0000781      7/85 173/19894 9.292010e-06 5.389366e-04 3.286437e-04
## GO:0032301      2/85   2/19894 1.804163e-05 6.321121e-04 3.854622e-04
##                                                                 geneID Count
## GO:0097136                                    BCL2/BAK1/BCL2L11/BCL2L1     4
## GO:1902911               RB1/CDKN1A/CCND1/IGF1R/IRS1/PRKAA1/CDK1/CCNB1     8
## GO:0061695 RB1/CDKN1A/CCND1/PIK3R1/IGF1R/PIK3CA/IRS1/PRKAA1/CDK1/CCNB1    10
## GO:0000307                                 RB1/CDKN1A/CCND1/CDK1/CCNB1     5
## GO:0000781                      CHEK1/PARP1/CDK1/RAD51/EZH2/MSH2/ERCC1     7
## GO:0032301                                                   MSH6/MSH2     2
##                    ID                              Description GeneRatio
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    21/100
## GO:0019902 GO:0019902                      phosphatase binding    15/100
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    17/100
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    17/100
## GO:0019903 GO:0019903              protein phosphatase binding    12/100
## GO:0019207 GO:0019207                kinase regulator activity    15/100
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0140297 478/18522 8.897902e-14 2.208867e-11 1.092469e-11
## GO:0019902 189/18522 9.184477e-14 2.208867e-11 1.092469e-11
## GO:0031625 305/18522 5.988911e-13 9.602220e-11 4.749101e-11
## GO:0044389 324/18522 1.584410e-12 1.905253e-10 9.423072e-11
## GO:0019903 142/18522 1.520189e-11 1.298375e-09 6.421548e-10
## GO:0019207 270/18522 1.619594e-11 1.298375e-09 6.421548e-10
##                                                                                                                       geneID
## GO:0140297 VHL/ETS1/STAT5A/YAP1/ESR1/BCL2/ARID1A/YWHAZ/NCOA3/CTNNB1/RB1/PARP1/MYC/GATA3/JUN/STAT3/E2F1/CDKN2A/SMAD3/MAPK3/AR
## GO:0019902                               MAPK8/PTK2/MAPK1/MET/BCL2/CTNNB1/PIK3R1/CDH2/CDKN1B/MAPT/EGFR/STAT3/PXN/SMAD3/MAPK3
## GO:0031625               HSPA1A/CDKN1A/CASP8/BCL2/BID/YWHAZ/CTNNB1/RB1/TUBA1B/SQSTM1/PARP1/ERBB3/CDKN1B/JUN/CHEK2/EGFR/SMAD3
## GO:0044389               HSPA1A/CDKN1A/CASP8/BCL2/BID/YWHAZ/CTNNB1/RB1/TUBA1B/SQSTM1/PARP1/ERBB3/CDKN1B/JUN/CHEK2/EGFR/SMAD3
## GO:0019903                                                 MAPK8/PTK2/MET/BCL2/CTNNB1/PIK3R1/CDH2/CDKN1B/MAPT/EGFR/STAT3/PXN
## GO:0019207                      AKT1/CDKN1A/CCND1/PIK3R1/CCNE2/CASP3/PIK3CA/ERBB3/CDKN1B/EGFR/CAV1/CDKN2A/CCNE1/AKT1S1/RPTOR
##            Count
## GO:0140297    21
## GO:0019902    15
## GO:0031625    17
## GO:0044389    17
## GO:0019903    12
## GO:0019207    15
##                    ID                                 Description GeneRatio
## GO:0048732 GO:0048732                           gland development    27/100
## GO:0071214 GO:0071214       cellular response to abiotic stimulus    24/100
## GO:0104004 GO:0104004 cellular response to environmental stimulus    24/100
## GO:0062197 GO:0062197        cellular response to chemical stress    23/100
## GO:0051402 GO:0051402                    neuron apoptotic process    22/100
## GO:0050673 GO:0050673               epithelial cell proliferation    25/100
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0048732 449/18888 2.546673e-21 9.901464e-18 4.525035e-18
## GO:0071214 334/18888 9.051528e-21 1.173078e-17 5.361045e-18
## GO:0104004 334/18888 9.051528e-21 1.173078e-17 5.361045e-18
## GO:0062197 311/18888 3.366386e-20 3.272127e-17 1.495384e-17
## GO:0051402 292/18888 1.633773e-19 1.270422e-16 5.805912e-17
## GO:0050673 482/18888 3.311319e-18 2.145735e-15 9.806153e-16
##                                                                                                                                                             geneID
## GO:0048732 AKT1/ATM/STAT5A/CCND1/ITGA2/MAPK1/TGM2/ESR1/MET/BCL2/CTNNB1/SRSF1/FASN/BCL2L11/PIK3CA/GATA3/ERRFI1/CDKN1B/EZH2/EGFR/CAV1/BRCA2/RAF1/AKT2/SMAD3/MAPK3/AR
## GO:0071214              MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/YAP1/ITGA2/IGF1R/CHEK1/PIK3R1/PARP1/MYC/CASP3/PIK3CA/GATA3/CHEK2/EGFR/BRCA2/CASP9/AKT2/BCL2L1/MAPK3/RPTOR
## GO:0104004              MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/YAP1/ITGA2/IGF1R/CHEK1/PIK3R1/PARP1/MYC/CASP3/PIK3CA/GATA3/CHEK2/EGFR/BRCA2/CASP9/AKT2/BCL2L1/MAPK3/RPTOR
## GO:0062197                              HSPA1A/AKT1/MTOR/MAPK8/FOXO3/ATM/MAPK1/G6PD/MET/PARP1/CASP3/PIK3CA/PRDX1/JUN/EZH2/MAPT/AXL/EGFR/CAV1/PXN/MAPK9/MAPK3/RPTOR
## GO:0051402                            FOXO3/ATM/CASP8/KRAS/CCND1/G6PD/BCL2/XIAP/BID/CTNNB1/RB1/PARP1/CASP3/BCL2L11/PIK3CA/ERBB3/GATA3/AXL/CASP9/AKT2/BCL2L1/AKT1S1
## GO:0050673             AKT1/CDKN1A/NRAS/STAT5A/CCND1/YAP1/MAPK1/ESR1/BID/CTNNB1/RB1/MYC/GATA3/ERRFI1/CDKN1B/EGFR/CAV1/STAT3/BRCA2/RAF1/BCL2L1/SMAD3/PRKCA/RPTOR/AR
##            Count
## GO:0048732    27
## GO:0071214    24
## GO:0104004    24
## GO:0062197    23
## GO:0051402    22
## GO:0050673    25
##                    ID                  Description GeneRatio   BgRatio
## GO:0005925 GO:0005925               focal adhesion    16/100 421/19894
## GO:0030055 GO:0030055      cell-substrate junction    16/100 431/19894
## GO:0005741 GO:0005741 mitochondrial outer membrane     9/100 219/19894
## GO:0044853 GO:0044853         plasma membrane raft     7/100 113/19894
## GO:0031143 GO:0031143                 pseudopodium     4/100  18/19894
## GO:0045121 GO:0045121                membrane raft    10/100 286/19894
##                  pvalue     p.adjust       qvalue
## GO:0005925 3.233184e-10 7.168686e-08 4.527591e-08
## GO:0030055 4.551547e-10 7.168686e-08 4.527591e-08
## GO:0005741 1.609700e-06 8.290411e-05 5.236049e-05
## GO:0044853 1.638486e-06 8.290411e-05 5.236049e-05
## GO:0031143 1.742181e-06 8.290411e-05 5.236049e-05
## GO:0045121 1.785485e-06 8.290411e-05 5.236049e-05
##                                                                                             geneID
## GO:0005925 HSPA1A/MYH9/KRAS/PTK2/ITGA2/MAPK1/TGM2/YWHAZ/CTNNB1/CDH2/SHC1/EGFR/CAV1/ANXA1/PXN/MAPK3
## GO:0030055 HSPA1A/MYH9/KRAS/PTK2/ITGA2/MAPK1/TGM2/YWHAZ/CTNNB1/CDH2/SHC1/EGFR/CAV1/ANXA1/PXN/MAPK3
## GO:0005741                                      MTOR/FOXO3/CASP8/KRAS/BCL2/BID/BCL2L11/RAF1/BCL2L1
## GO:0044853                                                 MAPK1/IGF1R/CTNNB1/CDH2/IRS1/CAV1/MAPK3
## GO:0031143                                                                  MAPK1/RAB25/RAF1/MAPK3
## GO:0045121                                  MAPK1/IGF1R/GAB2/CTNNB1/CDH2/IRS1/MAPT/EGFR/CAV1/MAPK3
##            Count
## GO:0005925    16
## GO:0030055    16
## GO:0005741     9
## GO:0044853     7
## GO:0031143     4
## GO:0045121    10
##                    ID                              Description GeneRatio
## GO:0019902 GO:0019902                      phosphatase binding    16/123
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    22/123
## GO:0019207 GO:0019207                kinase regulator activity    16/123
## GO:0019887 GO:0019887        protein kinase regulator activity    15/123
## GO:0019903 GO:0019903              protein phosphatase binding    12/123
## GO:0004674 GO:0004674 protein serine/threonine kinase activity    18/123
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0019902 189/18522 1.329406e-13 7.138909e-11 3.652367e-11
## GO:0140297 478/18522 7.298746e-13 1.959713e-10 1.002617e-10
## GO:0019207 270/18522 3.130805e-11 5.294880e-09 2.708936e-09
## GO:0019887 232/18522 3.944044e-11 5.294880e-09 2.708936e-09
## GO:0019903 142/18522 1.792141e-10 1.924759e-08 9.847343e-09
## GO:0004674 427/18522 4.517203e-10 3.562182e-08 1.822463e-08
##                                                                                                                                 geneID
## GO:0019902                                    MAPK8/PTK2/PIK3R1/EGFR/MET/PXN/MAPK1/YWHAE/BCL2/SMAD3/MAPK3/CDH2/MAPT/CDKN1B/CTNNB1/TSC2
## GO:0140297 VHL/ETS1/STAT5A/NCOA3/YAP1/EIF4E/TP53BP1/RB1/PARP1/BCL2/MYC/ARID1A/YWHAZ/GATA3/E2F1/CDKN2A/SMAD3/MAPK3/ESR1/AR/SMAD4/CTNNB1
## GO:0019207                         AKT1/CDKN1A/CCND1/PIK3R1/EGFR/CASP3/CCNE1/RICTOR/CCNE2/PIK3CA/CCNB1/CDKN2A/YWHAB/NRG1/AKT1S1/CDKN1B
## GO:0019887                                AKT1/CDKN1A/CCND1/EGFR/CASP3/CCNE1/RICTOR/CCNE2/PIK3CA/CCNB1/CDKN2A/YWHAB/NRG1/AKT1S1/CDKN1B
## GO:0019903                                                           MAPK8/PTK2/PIK3R1/EGFR/MET/PXN/YWHAE/BCL2/CDH2/MAPT/CDKN1B/CTNNB1
## GO:0004674                       AKT1/MTOR/MAPK8/ATM/CHEK1/EGFR/AKT2/PRKAA1/PRKCA/MAPK1/BRAF/PIK3CA/CDK1/MAPK9/RAF1/MAPK3/GSK3A/ACVRL1
##            Count
## GO:0019902    16
## GO:0140297    22
## GO:0019207    16
## GO:0019887    15
## GO:0019903    12
## GO:0004674    18
##                    ID                                 Description GeneRatio
## GO:0051402 GO:0051402                    neuron apoptotic process    26/123
## GO:0048732 GO:0048732                           gland development    29/123
## GO:0071214 GO:0071214       cellular response to abiotic stimulus    26/123
## GO:0104004 GO:0104004 cellular response to environmental stimulus    26/123
## GO:0009314 GO:0009314                       response to radiation    27/123
## GO:0062197 GO:0062197        cellular response to chemical stress    23/123
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0051402 292/18888 2.224843e-22 9.546801e-19 4.295118e-19
## GO:0048732 449/18888 5.318679e-21 7.376703e-18 3.318788e-18
## GO:0071214 334/18888 6.876442e-21 7.376703e-18 3.318788e-18
## GO:0104004 334/18888 6.876442e-21 7.376703e-18 3.318788e-18
## GO:0009314 431/18888 3.167698e-19 2.718518e-16 1.223065e-16
## GO:0062197 311/18888 4.852779e-18 3.470546e-15 1.561403e-15
##                                                                                                                                                                      geneID
## GO:0051402              FOXO3/ATM/CASP8/KRAS/CCND1/XIAP/AKT2/AXL/MSH2/CASP3/GAPDH/BRAF/RB1/G6PD/PARP1/BCL2/BCL2L11/PIK3CA/BID/BCL2L1/GATA3/CASP9/AKT1S1/GSK3A/COL6A1/CTNNB1
## GO:0048732 AKT1/ATM/CCND1/SRSF1/STAT5A/EGFR/EZH2/MET/AKT2/ITGA2/MAPK1/BRAF/FASN/XBP1/BCL2/BCL2L11/PIK3CA/GATA3/BRCA2/RAF1/SMAD3/MAPK3/ESR1/NRG1/TYMS/AR/CDKN1B/SMAD4/CTNNB1
## GO:0071214         MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PIK3R1/CHEK1/IGF1R/EGFR/PTGS2/AKT2/CASP3/YAP1/ITGA2/TP53BP1/PARP1/MYC/PIK3CA/BCL2L1/GATA3/BRCA2/CASP9/MAPK3/RAD51/ERCC1
## GO:0104004         MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PIK3R1/CHEK1/IGF1R/EGFR/PTGS2/AKT2/CASP3/YAP1/ITGA2/TP53BP1/PARP1/MYC/PIK3CA/BCL2L1/GATA3/BRCA2/CASP9/MAPK3/RAD51/ERCC1
## GO:0009314        AKT1/MAPK8/CDKN1A/ATM/KRAS/CCND1/PIK3R1/KIT/EGFR/AKT2/PRKAA1/MSH2/CASP3/YAP1/TP53BP1/BRAF/MSH6/PARP1/BCL2/MYC/BCL2L1/GATA3/BRCA2/CASP9/COL6A1/RAD51/ERCC1
## GO:0062197                                    HSPA1A/AKT1/MTOR/MAPK8/FOXO3/ATM/EGFR/EZH2/PTGS2/MET/PRKAA1/PXN/AXL/CASP3/MAPK1/G6PD/PRDX1/PARP1/PIK3CA/CDK1/MAPK9/MAPK3/MAPT
##            Count
## GO:0051402    26
## GO:0048732    29
## GO:0071214    26
## GO:0104004    26
## GO:0009314    27
## GO:0062197    23
##                    ID                                        Description
## GO:0005925 GO:0005925                                     focal adhesion
## GO:0030055 GO:0030055                            cell-substrate junction
## GO:0000781 GO:0000781                       chromosome, telomeric region
## GO:0000307 GO:0000307 cyclin-dependent protein kinase holoenzyme complex
## GO:1902911 GO:1902911                             protein kinase complex
## GO:0031252 GO:0031252                                  cell leading edge
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925    16/123 421/19894 7.292812e-09 1.231678e-06 6.992379e-07
## GO:0030055    16/123 431/19894 1.015438e-08 1.231678e-06 6.992379e-07
## GO:0000781    11/123 173/19894 1.037931e-08 1.231678e-06 6.992379e-07
## GO:0000307     7/123  56/19894 5.245579e-08 4.668565e-06 2.650398e-06
## GO:1902911     9/123 150/19894 3.922105e-07 2.792539e-05 1.585356e-05
## GO:0031252    13/123 426/19894 2.411709e-06 1.404340e-04 7.972597e-05
##                                                                                                 geneID
## GO:0005925 HSPA1A/MYH9/KRAS/PTK2/EGFR/PXN/ITGA2/MAPK1/YWHAE/CTNNA1/YWHAZ/MAPK3/YWHAB/CDH2/ANXA1/CTNNB1
## GO:0030055 HSPA1A/MYH9/KRAS/PTK2/EGFR/PXN/ITGA2/MAPK1/YWHAE/CTNNA1/YWHAZ/MAPK3/YWHAB/CDH2/ANXA1/CTNNB1
## GO:0000781                              ATM/CHEK1/EZH2/MSH2/TP53BP1/PARP1/CDK1/BRCA2/XRCC1/RAD51/ERCC1
## GO:0000307                                                     CDKN1A/CCND1/CCNE1/RB1/CCNE2/CDK1/CCNB1
## GO:1902911                                        CDKN1A/CCND1/IGF1R/PRKAA1/CCNE1/RB1/CCNE2/CDK1/CCNB1
## GO:0031252                       AKT1/MYH9/CASP8/EGFR/AKT2/PXN/CTNNA1/TSC1/PIK3CA/NF2/CDH2/MAPT/CTNNB1
##            Count
## GO:0005925    16
## GO:0030055    16
## GO:0000781    11
## GO:0000307     7
## GO:1902911     9
## GO:0031252    13
##                    ID                              Description GeneRatio
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    19/130
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    22/130
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    18/130
## GO:0045296 GO:0045296                         cadherin binding    18/130
## GO:0019902 GO:0019902                      phosphatase binding    14/130
## GO:0019903 GO:0019903              protein phosphatase binding    12/130
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0044389 324/18522 1.266754e-12 6.738711e-10 3.386596e-10
## GO:0140297 478/18522 2.339830e-12 6.738711e-10 3.386596e-10
## GO:0031625 305/18522 4.666835e-12 8.960324e-10 4.503087e-10
## GO:0045296 333/18522 2.013700e-11 2.899727e-09 1.457283e-09
## GO:0019902 189/18522 6.361969e-11 7.328988e-09 3.683245e-09
## GO:0019903 142/18522 3.430858e-10 3.293623e-08 1.655238e-08
##                                                                                                                               geneID
## GO:0044389          RB1/HSPA1A/BID/CDKN1A/CASP8/TUBA1B/ERBB3/EGFR/YWHAE/SQSTM1/CCNB1/CHEK2/YWHAZ/CTNNB1/XRCC5/PARP1/SMAD3/NFE2L2/JUN
## GO:0140297 RB1/VHL/ETS1/ARID1A/STAT5A/NCOA3/MYC/YAP1/EIF4E/TP53BP1/STAT3/GATA3/AR/E2F1/YWHAZ/CTNNB1/PARP1/SMAD3/NFE2L2/JUN/PARK7/SRC
## GO:0031625                RB1/HSPA1A/BID/CDKN1A/CASP8/TUBA1B/ERBB3/EGFR/YWHAE/SQSTM1/CHEK2/YWHAZ/CTNNB1/XRCC5/PARP1/SMAD3/NFE2L2/JUN
## GO:0045296                      HSPA1A/MYH9/EGFR/YWHAE/ANLN/EEF2/FASN/CTNNA1/ANXA1/YWHAB/CDH2/NDRG1/KDR/PRDX1/YWHAZ/CTNNB1/PARK7/SRC
## GO:0019902                                            MAPK8/PTK2/PIK3R1/EGFR/MET/PXN/MAPK1/YWHAE/CDH2/STAT3/MAPT/CTNNB1/SMAD3/PIK3R2
## GO:0019903                                                        MAPK8/PTK2/PIK3R1/EGFR/MET/PXN/YWHAE/CDH2/STAT3/MAPT/CTNNB1/PIK3R2
##            Count
## GO:0044389    19
## GO:0140297    22
## GO:0031625    18
## GO:0045296    18
## GO:0019902    14
## GO:0019903    12
##                    ID                                 Description GeneRatio
## GO:0062197 GO:0062197        cellular response to chemical stress    26/130
## GO:0051402 GO:0051402                    neuron apoptotic process    25/130
## GO:0006979 GO:0006979                response to oxidative stress    27/130
## GO:0071214 GO:0071214       cellular response to abiotic stimulus    25/130
## GO:0104004 GO:0104004 cellular response to environmental stimulus    25/130
## GO:0000302 GO:0000302         response to reactive oxygen species    21/130
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0062197 311/18888 5.021862e-21 2.258331e-17 1.003315e-17
## GO:0051402 292/18888 1.728946e-20 3.887535e-17 1.727126e-17
## GO:0006979 398/18888 1.889315e-19 2.832084e-16 1.258218e-16
## GO:0071214 334/18888 4.539431e-19 3.767813e-16 1.673937e-16
## GO:0104004 334/18888 4.539431e-19 3.767813e-16 1.673937e-16
## GO:0000302 203/18888 5.027102e-19 3.767813e-16 1.673937e-16
##                                                                                                                                                         geneID
## GO:0062197         HSPA1A/AKT1/MTOR/MAPK8/FOXO3/ATM/EGFR/EZH2/PTGS2/MET/PRKAA1/PXN/AXL/CASP3/MAPK1/G6PD/CDK1/MAPK9/PRDX1/MAPT/XRCC5/PARP1/NFE2L2/JUN/PARK7/SRC
## GO:0051402           RB1/XIAP/BID/FOXO3/ATM/CASP8/KRAS/CCND1/ERBB3/AKT2/AXL/MSH2/CASP3/GAPDH/BRAF/G6PD/COL6A1/AKT1S1/BCL2L1/KDR/GATA3/CTNNB1/PARP1/PARK7/GSK3A
## GO:0006979 HSPA1A/AKT1/MAPK8/FOXO3/ATM/EGFR/EZH2/PTGS2/MET/PRKAA1/PXN/AXL/CASP3/MAPK1/G6PD/COL6A1/CDK1/MAPK9/PRDX1/MAPT/PARP1/NFE2L2/ERCC1/JUN/PARK7/SRC/XRCC1
## GO:0071214   MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PIK3R1/CHEK1/IGF1R/EGFR/PTGS2/AKT2/MYC/CASP3/YAP1/ITGA2/TP53BP1/BCL2L1/GATA3/BRCA2/CHEK2/XRCC5/PARP1/ERCC1/SNAI2
## GO:0104004   MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PIK3R1/CHEK1/IGF1R/EGFR/PTGS2/AKT2/MYC/CASP3/YAP1/ITGA2/TP53BP1/BCL2L1/GATA3/BRCA2/CHEK2/XRCC5/PARP1/ERCC1/SNAI2
## GO:0000302                                     AKT1/MAPK8/FOXO3/ATM/EGFR/EZH2/MET/PRKAA1/PXN/AXL/CASP3/MAPK1/COL6A1/CDK1/MAPK9/PRDX1/MAPT/NFE2L2/JUN/PARK7/SRC
##            Count
## GO:0062197    26
## GO:0051402    25
## GO:0006979    27
## GO:0071214    25
## GO:0104004    25
## GO:0000302    21
##                    ID                  Description GeneRatio   BgRatio
## GO:0005925 GO:0005925               focal adhesion    19/130 421/19894
## GO:0030055 GO:0030055      cell-substrate junction    19/130 431/19894
## GO:0000781 GO:0000781 chromosome, telomeric region    12/130 173/19894
## GO:0045121 GO:0045121                membrane raft    12/130 286/19894
## GO:0098857 GO:0098857         membrane microdomain    12/130 287/19894
## GO:1902911 GO:1902911       protein kinase complex     9/130 150/19894
##                  pvalue     p.adjust       qvalue
## GO:0005925 3.586150e-11 1.010292e-08 6.121270e-09
## GO:0030055 5.359637e-11 1.010292e-08 6.121270e-09
## GO:0000781 1.510211e-09 1.897832e-07 1.149880e-07
## GO:0045121 3.949491e-07 3.090790e-05 1.872683e-05
## GO:0098857 4.099190e-07 3.090790e-05 1.872683e-05
## GO:1902911 6.275122e-07 3.942869e-05 2.388950e-05
##                                                                                                                geneID
## GO:0005925 HSPA1A/MYH9/KRAS/PTK2/EGFR/PXN/ITGA2/MAPK1/YWHAE/TGM2/CTNNA1/ANXA1/YWHAB/CDH2/YWHAZ/CTNNB1/SHC1/PIK3R2/SRC
## GO:0030055 HSPA1A/MYH9/KRAS/PTK2/EGFR/PXN/ITGA2/MAPK1/YWHAE/TGM2/CTNNA1/ANXA1/YWHAB/CDH2/YWHAZ/CTNNB1/SHC1/PIK3R2/SRC
## GO:0000781                                       ATM/CHEK1/EZH2/MSH2/TP53BP1/CDK1/BRCA2/CHEK2/XRCC5/PARP1/ERCC1/XRCC1
## GO:0045121                                          IGF1R/EGFR/PTGS2/MAPK1/GAB2/CTNNA1/CDH2/KDR/MAPT/CTNNB1/PARK7/SRC
## GO:0098857                                          IGF1R/EGFR/PTGS2/MAPK1/GAB2/CTNNA1/CDH2/KDR/MAPT/CTNNB1/PARK7/SRC
## GO:1902911                                                       RB1/CDKN1A/CCND1/IGF1R/PRKAA1/CCNE1/CDK1/CCNB1/XRCC5
##            Count
## GO:0005925    19
## GO:0030055    19
## GO:0000781    12
## GO:0045121    12
## GO:0098857    12
## GO:1902911     9
##                    ID                              Description GeneRatio
## GO:0097718 GO:0097718       disordered domain specific binding      4/32
## GO:0140297 GO:0140297 DNA-binding transcription factor binding      7/32
## GO:0120283 GO:0120283  protein serine/threonine kinase binding      2/32
## GO:0003713 GO:0003713       transcription coactivator activity      5/32
## GO:0005178 GO:0005178                         integrin binding      4/32
## GO:0031625 GO:0031625         ubiquitin protein ligase binding      5/32
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0097718  32/18522 2.549897e-07 5.788265e-05 2.657261e-05
## GO:0140297 478/18522 1.403336e-05 1.592786e-03 7.312120e-04
## GO:0120283   7/18522 6.039943e-05 4.570223e-03 2.098085e-03
## GO:0003713 271/18522 9.416390e-05 5.343801e-03 2.453217e-03
## GO:0005178 157/18522 1.484910e-04 6.197478e-03 2.845121e-03
## GO:0031625 305/18522 1.638100e-04 6.197478e-03 2.845121e-03
##                                              geneID Count
## GO:0097718                HSPA1A/NCOA3/GAPDH/CTNNB1     4
## GO:0140297 VHL/STAT5A/YAP1/ETS1/ARID1A/NCOA3/CTNNB1     7
## GO:0120283                               MAPK8/XIAP     2
## GO:0003713            YAP1/ETS1/ARID1A/NCOA3/CTNNB1     5
## GO:0005178                      MYH9/PTK2/ITGA2/FN1     4
## GO:0031625           HSPA1A/CDKN1A/CASP8/BID/CTNNB1     5
##                    ID                   Description GeneRatio   BgRatio
## GO:0051402 GO:0051402      neuron apoptotic process     10/32 292/18888
## GO:0030099 GO:0030099  myeloid cell differentiation     10/32 439/18888
## GO:0001667 GO:0001667 ameboidal-type cell migration     10/32 498/18888
## GO:0010631 GO:0010631     epithelial cell migration      9/32 375/18888
## GO:0090132 GO:0090132          epithelium migration      9/32 378/18888
## GO:0090130 GO:0090130              tissue migration      9/32 383/18888
##                  pvalue     p.adjust       qvalue
## GO:0051402 3.194726e-11 7.731238e-08 3.298975e-08
## GO:0030099 1.696073e-09 2.052248e-06 8.757092e-07
## GO:0001667 5.685674e-09 3.953413e-06 1.686950e-06
## GO:0010631 8.161692e-09 3.953413e-06 1.686950e-06
## GO:0090132 8.746054e-09 3.953413e-06 1.686950e-06
## GO:0090130 9.801852e-09 3.953413e-06 1.686950e-06
##                                                               geneID Count
## GO:0051402     FOXO3/ATM/CASP8/CCND1/XIAP/BID/KRAS/G6PD/GAPDH/CTNNB1    10
## GO:0030099 HSPA1A/MTOR/STAT5A/MYH9/FOXO3/CASP8/ETS1/GAB2/G6PD/CTNNB1    10
## GO:0001667       AKT1/MTOR/STAT5A/MYH9/ANLN/ETS1/PTEN/PTK2/ITGA2/FN1    10
## GO:0010631           AKT1/MTOR/STAT5A/MYH9/ANLN/ETS1/PTEN/PTK2/ITGA2     9
## GO:0090132           AKT1/MTOR/STAT5A/MYH9/ANLN/ETS1/PTEN/PTK2/ITGA2     9
## GO:0090130           AKT1/MTOR/STAT5A/MYH9/ANLN/ETS1/PTEN/PTK2/ITGA2     9
##                    ID                  Description GeneRatio   BgRatio
## GO:0005925 GO:0005925               focal adhesion      8/32 421/19894
## GO:0030055 GO:0030055      cell-substrate junction      8/32 431/19894
## GO:0005826 GO:0005826  actomyosin contractile ring      2/32   4/19894
## GO:0005741 GO:0005741 mitochondrial outer membrane      5/32 219/19894
## GO:0031968 GO:0031968     organelle outer membrane      5/32 248/19894
## GO:0019867 GO:0019867               outer membrane      5/32 250/19894
##                  pvalue     p.adjust       qvalue
## GO:0005925 2.536321e-07 2.728748e-05 1.436183e-05
## GO:0030055 3.031942e-07 2.728748e-05 1.436183e-05
## GO:0005826 1.500952e-05 9.005712e-04 4.739849e-04
## GO:0005741 2.440940e-05 1.098423e-03 5.781174e-04
## GO:0031968 4.422395e-05 1.378405e-03 7.254762e-04
## GO:0019867 4.594683e-05 1.378405e-03 7.254762e-04
##                                                   geneID Count
## GO:0005925 HSPA1A/MYH9/MAPK1/KRAS/PTK2/ITGA2/CTNNB1/TGM2     8
## GO:0030055 HSPA1A/MYH9/MAPK1/KRAS/PTK2/ITGA2/CTNNB1/TGM2     8
## GO:0005826                                     MYH9/ANLN     2
## GO:0005741                     MTOR/FOXO3/CASP8/BID/KRAS     5
## GO:0031968                     MTOR/FOXO3/CASP8/BID/KRAS     5
## GO:0019867                     MTOR/FOXO3/CASP8/BID/KRAS     5
##                    ID                              Description GeneRatio
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding      9/58
## GO:0030235 GO:0030235 nitric-oxide synthase regulator activity      3/58
## GO:0019902 GO:0019902                      phosphatase binding      7/58
## GO:0140297 GO:0140297 DNA-binding transcription factor binding     10/58
## GO:0031625 GO:0031625         ubiquitin protein ligase binding      8/58
## GO:0001618 GO:0001618                  virus receptor activity      5/58
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0044389 324/18522 6.881594e-07 0.0001723522 7.076044e-05
## GO:0030235   7/18522 1.010863e-06 0.0001723522 7.076044e-05
## GO:0019902 189/18522 1.996676e-06 0.0001748303 7.177785e-05
## GO:0140297 478/18522 2.050796e-06 0.0001748303 7.177785e-05
## GO:0031625 305/18522 4.625247e-06 0.0002269983 9.319580e-05
## GO:0001618  79/18522 4.767238e-06 0.0002269983 9.319580e-05
##                                                             geneID Count
## GO:0044389    HSPA1A/CDKN1A/CASP8/BCL2/BID/YWHAZ/TUBA1B/EGFR/CCNB1     9
## GO:0030235                                          AKT1/ESR1/EGFR     3
## GO:0019902                   MAPK8/MAPK1/MET/BCL2/PTK2/PIK3R1/EGFR     7
## GO:0140297 VHL/STAT5A/YAP1/ESR1/BCL2/ETS1/ARID1A/YWHAZ/NCOA3/GATA3    10
## GO:0031625          HSPA1A/CDKN1A/CASP8/BCL2/BID/YWHAZ/TUBA1B/EGFR     8
## GO:0001618                             HSPA1A/ITGA2/CDK1/TFRC/EGFR     5
##                    ID                                 Description GeneRatio
## GO:0031667 GO:0031667                 response to nutrient levels     16/58
## GO:0071496 GO:0071496      cellular response to external stimulus     14/58
## GO:0048732 GO:0048732                           gland development     15/58
## GO:0045785 GO:0045785        positive regulation of cell adhesion     15/58
## GO:0071214 GO:0071214       cellular response to abiotic stimulus     13/58
## GO:0104004 GO:0104004 cellular response to environmental stimulus     13/58
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0031667 490/18888 9.688790e-13 1.736571e-09 8.040361e-10
## GO:0071496 335/18888 1.167050e-12 1.736571e-09 8.040361e-10
## GO:0048732 449/18888 4.050549e-12 4.018145e-09 1.860410e-09
## GO:0045785 485/18888 1.212227e-11 9.018970e-09 4.175804e-09
## GO:0071214 334/18888 2.021181e-11 1.002506e-08 4.641624e-09
## GO:0104004 334/18888 2.021181e-11 1.002506e-08 4.641624e-09
##                                                                                               geneID
## GO:0031667 AKT1/MTOR/MAPK8/CDKN1A/FOXO3/MAPK1/G6PD/BCL2/IGF1R/YWHAZ/ITGA2/IGFBP2/TSC1/XBP1/TFRC/EGFR
## GO:0071496           MTOR/MAPK8/CDKN1A/FOXO3/CASP8/MAPK1/BCL2/IGF1R/YWHAZ/CHEK1/ITGA2/TSC1/XBP1/EGFR
## GO:0048732           AKT1/ATM/STAT5A/CCND1/MAPK1/ESR1/MET/BCL2/ITGA2/TGM2/SRSF1/FASN/GATA3/XBP1/EGFR
## GO:0045785          AKT1/MTOR/FOXO3/ATM/ETS1/ARID1A/FN1/ITGA2/TGM2/IGFBP2/GATA3/TSC1/XBP1/TFRC/PREX1
## GO:0071214                 MTOR/MAPK8/CDKN1A/ATM/CASP8/YAP1/IGF1R/PTEN/CHEK1/ITGA2/PIK3R1/GATA3/EGFR
## GO:0104004                 MTOR/MAPK8/CDKN1A/ATM/CASP8/YAP1/IGF1R/PTEN/CHEK1/ITGA2/PIK3R1/GATA3/EGFR
##            Count
## GO:0031667    16
## GO:0071496    14
## GO:0048732    15
## GO:0045785    15
## GO:0071214    13
## GO:0104004    13
##                    ID                                        Description
## GO:0005925 GO:0005925                                     focal adhesion
## GO:0030055 GO:0030055                            cell-substrate junction
## GO:0097125 GO:0097125                             cyclin B1-CDK1 complex
## GO:0000307 GO:0000307 cyclin-dependent protein kinase holoenzyme complex
## GO:0005741 GO:0005741                       mitochondrial outer membrane
## GO:0005826 GO:0005826                        actomyosin contractile ring
##            GeneRatio   BgRatio       pvalue    p.adjust       qvalue
## GO:0005925      9/58 421/19894 3.324184e-06 0.000418428 0.0002477534
## GO:0030055      9/58 431/19894 4.023346e-06 0.000418428 0.0002477534
## GO:0097125      2/58   2/19894 8.353730e-06 0.000579192 0.0003429426
## GO:0000307      4/58  56/19894 2.133362e-05 0.001109348 0.0006568509
## GO:0005741      6/58 219/19894 4.172625e-05 0.001731061 0.0010249700
## GO:0005826      2/58   4/19894 4.993444e-05 0.001731061 0.0010249700
##                                                       geneID Count
## GO:0005925 HSPA1A/MYH9/MAPK1/KRAS/PTK2/YWHAZ/ITGA2/TGM2/EGFR     9
## GO:0030055 HSPA1A/MYH9/MAPK1/KRAS/PTK2/YWHAZ/ITGA2/TGM2/EGFR     9
## GO:0097125                                        CDK1/CCNB1     2
## GO:0000307                           CDKN1A/CCND1/CDK1/CCNB1     4
## GO:0005741                    MTOR/FOXO3/CASP8/BCL2/KRAS/BID     6
## GO:0005826                                         MYH9/ANLN     2
##                    ID                              Description GeneRatio
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    26/154
## GO:0019902 GO:0019902                      phosphatase binding    18/154
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    22/154
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    21/154
## GO:0019903 GO:0019903              protein phosphatase binding    15/154
## GO:0004674 GO:0004674 protein serine/threonine kinase activity    22/154
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0140297 478/18522 2.427346e-14 6.417153e-12 3.244205e-12
## GO:0019902 189/18522 2.503227e-14 6.417153e-12 3.244205e-12
## GO:0044389 324/18522 3.302137e-14 6.417153e-12 3.244205e-12
## GO:0031625 305/18522 1.007656e-13 1.468659e-11 7.424835e-12
## GO:0019903 142/18522 8.689144e-13 1.013154e-10 5.122022e-11
## GO:0004674 427/18522 8.385438e-12 8.147851e-10 4.119163e-10
##                                                                                                                                                       geneID
## GO:0140297 GATA3/AR/CTNNB1/YWHAZ/PARP1/ESR1/BCL2/NCOA3/RB1/MYC/JUN/ETS1/STAT5A/STAT3/GSK3B/ARID1A/E2F1/YAP1/EIF4E/TP53BP1/SMAD4/VHL/PARK7/CDKN2A/SMAD3/MAPK3
## GO:0019902                                          CTNNB1/CDH2/PIK3R1/PXN/PIK3R2/YWHAE/MET/BCL2/PTK2/CDKN1B/EGFR/STAT3/MAPT/MAPK8/MAPK1/RPS6KB1/SMAD3/MAPK3
## GO:0044389                 SQSTM1/HSPA1A/CTNNB1/TUBA1B/CDKN1A/ERBB3/YWHAZ/YWHAE/PARP1/CCNB1/BCL2/RB1/CDKN1B/EGFR/JUN/CASP8/GSK3B/BID/CHEK2/BECN1/SMAD1/SMAD3
## GO:0031625                       SQSTM1/HSPA1A/CTNNB1/TUBA1B/CDKN1A/ERBB3/YWHAZ/YWHAE/PARP1/BCL2/RB1/CDKN1B/EGFR/JUN/CASP8/GSK3B/BID/CHEK2/BECN1/SMAD1/SMAD3
## GO:0019903                                                            CTNNB1/CDH2/PIK3R1/PXN/PIK3R2/YWHAE/MET/BCL2/PTK2/CDKN1B/EGFR/STAT3/MAPT/MAPK8/RPS6KB1
## GO:0004674                   ATM/PRKCA/CDK1/AKT2/EGFR/RAF1/AKT1/CHEK1/GSK3B/PRKAA1/MAPK8/CHEK2/PRKCD/PIK3CA/MAPK1/RPS6KB1/NEK7/BRAF/EEF2K/ACVRL1/MAPK9/MAPK3
##            Count
## GO:0140297    26
## GO:0019902    18
## GO:0044389    22
## GO:0031625    21
## GO:0019903    15
## GO:0004674    22
##                    ID                           Description GeneRatio   BgRatio
## GO:0051402 GO:0051402              neuron apoptotic process    30/154 292/18888
## GO:0043434 GO:0043434           response to peptide hormone    33/154 438/18888
## GO:0010038 GO:0010038                 response to metal ion    29/154 360/18888
## GO:0062197 GO:0062197  cellular response to chemical stress    27/154 311/18888
## GO:0000302 GO:0000302   response to reactive oxygen species    23/154 203/18888
## GO:0097191 GO:0097191 extrinsic apoptotic signaling pathway    24/154 230/18888
##                  pvalue     p.adjust       qvalue
## GO:0051402 1.491941e-24 7.234423e-21 3.236727e-21
## GO:0043434 1.157285e-22 2.805838e-19 1.255350e-19
## GO:0010038 9.275171e-21 1.499177e-17 6.707413e-18
## GO:0062197 3.285101e-20 3.982363e-17 1.781735e-17
## GO:0000302 6.154374e-20 5.214606e-17 2.333048e-17
## GO:0097191 6.452389e-20 5.214606e-17 2.333048e-17
##                                                                                                                                                                                                      geneID
## GO:0051402                       GAPDH/GATA3/ATM/G6PD/MSH2/CTNNB1/CCND1/COL6A1/ERBB3/PARP1/KDR/BCL2L1/AKT2/BCL2/KRAS/RB1/BCL2L11/FOXO3/XIAP/CASP8/GSK3B/BID/AXL/CASP3/PIK3CA/DIABLO/BRAF/AKT1S1/PARK7/CASP9
## GO:0043434 PRKCA/PIK3R1/COL6A1/PXN/ERRFI1/PIK3R2/PARP1/AKT2/RB1/PTK2/CDKN1B/IRS1/RAF1/PTGS2/SHC1/AKT1/STAT5A/STAT3/GSK3B/IGF1R/PRKAA1/PRKCD/CAV1/TFF1/PIK3CA/MAPK1/RPS6KB1/BRAF/EEF2K/TSC1/XBP1/SMAD3/MAPK3
## GO:0010038                                 TFRC/G6PD/NDRG1/PARP1/CDK1/BCL2/KIT/CDKN1B/EGFR/JUN/PTGS2/AKT1/CASP8/MAPT/PRKAA1/MAPK8/CAV1/CASP3/TFF1/MAPK1/NEK7/ERCC1/BRAF/BECN1/EEF2K/PARK7/CASP9/MAPK9/MAPK3
## GO:0062197                                              ATM/G6PD/HSPA1A/PXN/PARP1/CDK1/MET/EGFR/JUN/EZH2/PTGS2/FOXO3/AKT1/MAPT/PRKAA1/MAPK8/PRKCD/AXL/CAV1/CASP3/PRDX1/PIK3CA/MAPK1/BECN1/PARK7/MAPK9/MAPK3
## GO:0000302                                                                      ATM/COL6A1/PXN/CDK1/MET/BCL2/EGFR/JUN/EZH2/FOXO3/AKT1/MAPT/PRKAA1/MAPK8/PRKCD/AXL/CASP3/PRDX1/MAPK1/BECN1/PARK7/MAPK9/MAPK3
## GO:0097191                                                  AR/HSPA1A/SERPINE1/PIK3R1/PEA15/CTNNA1/ERBB3/BCL2L1/BCL2/BCL2L11/RAF1/FOXO3/AKT1/CASP8/GSK3B/BID/CAV1/YAP1/RET/RPS6KB1/DIABLO/SMAD4/PARK7/SMAD3
##            Count
## GO:0051402    30
## GO:0043434    33
## GO:0010038    29
## GO:0062197    27
## GO:0000302    23
## GO:0097191    24
##                    ID
## GO:0005925 GO:0005925
## GO:0030055 GO:0030055
## GO:0000781 GO:0000781
## GO:0045121 GO:0045121
## GO:0098857 GO:0098857
## GO:0061695 GO:0061695
##                                                               Description
## GO:0005925                                                 focal adhesion
## GO:0030055                                        cell-substrate junction
## GO:0000781                                   chromosome, telomeric region
## GO:0045121                                                  membrane raft
## GO:0098857                                           membrane microdomain
## GO:0061695 transferase complex, transferring phosphorus-containing groups
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925    20/154 421/19894 9.803904e-11 2.954678e-08 1.703570e-08
## GO:0030055    20/154 431/19894 1.484763e-10 2.954678e-08 1.703570e-08
## GO:0000781    12/154 173/19894 1.047443e-08 1.389607e-06 8.012017e-07
## GO:0045121    14/154 286/19894 5.109761e-08 4.247742e-06 2.449108e-06
## GO:0098857    14/154 287/19894 5.336360e-08 4.247742e-06 2.449108e-06
## GO:0061695    14/154 308/19894 1.276192e-07 8.465410e-06 4.880876e-06
##                                                                                                                       geneID
## GO:0005925 HSPA1A/CTNNB1/TGM2/CDH2/CTNNA1/ANXA1/YWHAZ/YWHAB/PXN/PIK3R2/ITGA2/MYH9/YWHAE/KRAS/PTK2/EGFR/SHC1/CAV1/MAPK1/MAPK3
## GO:0030055 HSPA1A/CTNNB1/TGM2/CDH2/CTNNA1/ANXA1/YWHAZ/YWHAB/PXN/PIK3R2/ITGA2/MYH9/YWHAE/KRAS/PTK2/EGFR/SHC1/CAV1/MAPK1/MAPK3
## GO:0000781                                              ATM/MSH2/PARP1/CDK1/EZH2/CHEK1/CHEK2/ERCC1/TP53BP1/RAD50/RAD51/XRCC1
## GO:0045121                                     CTNNB1/CDH2/CTNNA1/KDR/IRS1/EGFR/PTGS2/IGF1R/MAPT/CAV1/MAPK1/GAB2/PARK7/MAPK3
## GO:0098857                                     CTNNB1/CDH2/CTNNA1/KDR/IRS1/EGFR/PTGS2/IGF1R/MAPT/CAV1/MAPK1/GAB2/PARK7/MAPK3
## GO:0061695                              CCND1/PIK3R1/CDKN1A/PIK3R2/CDK1/CCNB1/RB1/IRS1/IGF1R/PRKAA1/CCNE2/CCNE1/PIK3CA/BECN1
##            Count
## GO:0005925    20
## GO:0030055    20
## GO:0000781    12
## GO:0045121    14
## GO:0098857    14
## GO:0061695    14
##                    ID                              Description GeneRatio
## GO:0019902 GO:0019902                      phosphatase binding    24/197
## GO:0004674 GO:0004674 protein serine/threonine kinase activity    31/197
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    32/197
## GO:0019903 GO:0019903              protein phosphatase binding    19/197
## GO:0106310 GO:0106310           protein serine kinase activity    27/197
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    25/197
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0019902 189/18522 3.522311e-19 2.345859e-16 1.338478e-16
## GO:0004674 427/18522 2.437307e-17 8.116233e-15 4.630884e-15
## GO:0140297 478/18522 7.451383e-17 1.654207e-14 9.438419e-15
## GO:0019903 142/18522 7.820802e-16 1.302164e-13 7.429762e-14
## GO:0106310 363/18522 1.829155e-15 2.436434e-13 1.390158e-13
## GO:0044389 324/18522 9.403920e-15 1.043835e-12 5.955816e-13
##                                                                                                                                                                                          geneID
## GO:0019902                                                MAPK14/CDKN1B/MAPK8/CDH2/MET/TP53/SMAD3/MAPK1/EGFR/YWHAE/MAPK3/TSC2/CTNNB1/MAPT/STAT3/PTK2/BCL2/LCK/PIK3R1/RPS6KB1/PIK3R2/PXN/SYK/BAD
## GO:0004674 MAPK14/MAPK8/PRKCD/RPS6KA1/AKT2/AKT3/AKT1/PIK3CA/RAF1/ATM/MAPK1/NEK7/MAPK9/STK11/EGFR/MTOR/MAPK3/ACVRL1/CHEK2/PRKCA/CHEK1/GSK3B/GSK3A/CDK1/EEF2K/BRAF/ARAF/RPS6KB1/MAP2K1/PRKAA1/SYK
## GO:0140297  MAPK14/YAP1/SRC/TP53/RB1/ESR1/GATA3/SMAD3/TP53BP1/YWHAZ/MAPK3/PCNA/SMAD4/CTNNB1/NFE2L2/JUN/EIF4E/STAT3/GSK3B/PARK7/BCL2/ETS1/KEAP1/E2F1/MYC/VHL/AR/NCOA3/STAT5A/ARID1A/PARP1/CDKN2A
## GO:0019903                                                                           MAPK14/CDKN1B/MAPK8/CDH2/MET/TP53/EGFR/YWHAE/CTNNB1/MAPT/STAT3/PTK2/BCL2/LCK/PIK3R1/RPS6KB1/PIK3R2/PXN/BAD
## GO:0106310                       MAPK14/MAPK8/PRKCD/RPS6KA1/AKT2/AKT3/AKT1/PIK3CA/RAF1/ATM/MAPK1/NEK7/MAPK9/STK11/MTOR/MAPK3/CHEK2/PRKCA/CHEK1/GSK3B/GSK3A/CDK1/BRAF/ARAF/RPS6KB1/MAP2K1/PRKAA1
## GO:0044389                                  CDKN1B/ERBB3/TP53/BECN1/RB1/CDKN1A/SMAD3/YWHAZ/XRCC5/EGFR/YWHAE/CHEK2/CTNNB1/NFE2L2/SMAD1/JUN/GSK3B/BCL2/CCNB1/TUBA1B/BID/HSPA1A/PARP1/CASP8/SQSTM1
##            Count
## GO:0019902    24
## GO:0004674    31
## GO:0140297    32
## GO:0019903    19
## GO:0106310    27
## GO:0044389    25
##                    ID                                 Description GeneRatio
## GO:0048732 GO:0048732                           gland development    45/198
## GO:0071214 GO:0071214       cellular response to abiotic stimulus    40/198
## GO:0104004 GO:0104004 cellular response to environmental stimulus    40/198
## GO:0050673 GO:0050673               epithelial cell proliferation    44/198
## GO:0097193 GO:0097193       intrinsic apoptotic signaling pathway    37/198
## GO:0043434 GO:0043434                 response to peptide hormone    41/198
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0048732 449/18888 2.873605e-31 1.501068e-27 6.678896e-28
## GO:0071214 334/18888 8.418777e-31 1.501068e-27 6.678896e-28
## GO:0104004 334/18888 8.418777e-31 1.501068e-27 6.678896e-28
## GO:0050673 482/18888 7.666647e-29 1.025222e-25 4.561655e-26
## GO:0097193 319/18888 5.519756e-28 5.905035e-25 2.627404e-25
## GO:0043434 438/18888 2.745077e-27 2.447236e-24 1.088880e-24
##                                                                                                                                                                                                                                                                geneID
## GO:0048732 CDKN1B/RPS6KA1/BCL2L11/SRC/AKT2/AKT1/MET/ESR1/PIK3CA/GATA3/SMAD3/RAF1/ATM/MAPK1/NOTCH1/ITGA2/STK11/BRCA2/EGFR/FASN/MAPK3/PCNA/SMAD4/CTNNB1/CDH1/TGM2/BCL2/NFKB1/CCND1/CAV1/AR/XBP1/TP63/TYMS/BRAF/PTCH1/NRG1/MAP2K1/STAT5A/PGR/EZH2/BAX/ERRFI1/SNAI2/SRSF1
## GO:0071214                    MAPK14/YAP1/MAPK8/PRKCD/AKT2/RAD51/TP53/IGF1R/PTEN/PIK3CA/CDKN1A/GATA3/ATM/TP53BP1/XRCC5/ITGA2/STK11/BRCA2/EGFR/MTOR/MAPK3/PCNA/CHEK2/BAK1/CHEK1/RAB11B/NFKB1/MYC/PIK3R1/BCL2L1/ERCC1/BAX/PTGS2/PARP1/CASP9/CASP3/RPTOR/BAD/SNAI2/CASP8
## GO:0104004                    MAPK14/YAP1/MAPK8/PRKCD/AKT2/RAD51/TP53/IGF1R/PTEN/PIK3CA/CDKN1A/GATA3/ATM/TP53BP1/XRCC5/ITGA2/STK11/BRCA2/EGFR/MTOR/MAPK3/PCNA/CHEK2/BAK1/CHEK1/RAB11B/NFKB1/MYC/PIK3R1/BCL2L1/ERCC1/BAX/PTGS2/PARP1/CASP9/CASP3/RPTOR/BAD/SNAI2/CASP8
## GO:0050673       YAP1/CDKN1B/ERBB2/KDR/RPS6KA1/AKT3/AKT1/NRAS/RB1/ESR1/CDKN1A/GATA3/SMAD3/RAF1/MAPK1/NOTCH1/STK11/BRCA2/EGFR/ACVRL1/BAK1/CTNNB1/CDH3/PRKCA/RICTOR/STAT3/MYC/CCND1/CAV1/AR/XBP1/BCL2L1/TP63/KIT/PTCH1/MAP2K1/STAT5A/PGR/BAX/BID/ERRFI1/RPTOR/BAD/SNAI2
## GO:0097193                                              PRKCD/BCL2L11/SRC/AKT1/TP53/BECN1/CDKN1A/ATM/STK11/BRCA2/CHEK2/BAK1/CTNNB1/NFE2L2/PARK7/BCL2/LCK/E2F1/MYC/CAV1/PIK3R1/XBP1/BCL2L1/TP63/MSH6/PDK1/BAX/BID/HSPA1A/PTGS2/PARP1/CASP9/CASP3/BAD/SNAI2/MSH2/DIABLO
## GO:0043434             MAPK14/CDKN1B/PRKCD/SRC/AKT2/AKT1/IGF1R/RB1/PIK3CA/SMAD3/RAF1/MAPK1/STK11/MTOR/MAPK3/TSC1/TSC2/NFE2L2/PRKCA/SHC1/STAT3/GSK3B/GSK3A/PTK2/EEF2K/NFKB1/IRS1/CAV1/PIK3R1/XBP1/BRAF/RPS6KB1/PRKAA1/COL6A1/STAT5A/PIK3R2/PXN/PTGS2/ERRFI1/PARP1/TFF1
##            Count
## GO:0048732    45
## GO:0071214    40
## GO:0104004    40
## GO:0050673    44
## GO:0097193    37
## GO:0043434    41
##                    ID                  Description GeneRatio   BgRatio
## GO:0045121 GO:0045121                membrane raft    20/198 286/19894
## GO:0098857 GO:0098857         membrane microdomain    20/198 287/19894
## GO:0005925 GO:0005925               focal adhesion    23/198 421/19894
## GO:0030055 GO:0030055      cell-substrate junction    23/198 431/19894
## GO:0044853 GO:0044853         plasma membrane raft    13/198 113/19894
## GO:0097136 GO:0097136 Bcl-2 family protein complex     6/198  10/19894
##                  pvalue     p.adjust       qvalue
## GO:0045121 9.650977e-12 2.293508e-09 1.391153e-09
## GO:0098857 1.028479e-11 2.293508e-09 1.391153e-09
## GO:0005925 3.861965e-11 5.741454e-09 3.482543e-09
## GO:0030055 6.170201e-11 6.879774e-09 4.173005e-09
## GO:0044853 1.017449e-10 9.075645e-09 5.504935e-09
## GO:0097136 1.830473e-10 1.340131e-08 8.128717e-09
##                                                                                                                                       geneID
## GO:0045121                     KDR/SRC/CDH2/IGF1R/MAPK1/EGFR/MAPK3/PECAM1/CTNNB1/MAPT/CDH1/PARK7/MS4A1/LCK/CTNNA1/IRS1/CAV1/PTCH1/GAB2/PTGS2
## GO:0098857                     KDR/SRC/CDH2/IGF1R/MAPK1/EGFR/MAPK3/PECAM1/CTNNB1/MAPT/CDH1/PARK7/MS4A1/LCK/CTNNA1/IRS1/CAV1/PTCH1/GAB2/PTGS2
## GO:0005925 SRC/CDH2/MAPK1/YWHAZ/VASP/ITGA2/EGFR/YWHAE/MAPK3/CTNNB1/SHC1/PTK2/TGM2/CTNNA1/CAV1/MYH9/KRAS/MAP2K1/YWHAB/PIK3R2/ANXA1/HSPA1A/PXN
## GO:0030055 SRC/CDH2/MAPK1/YWHAZ/VASP/ITGA2/EGFR/YWHAE/MAPK3/CTNNB1/SHC1/PTK2/TGM2/CTNNA1/CAV1/MYH9/KRAS/MAP2K1/YWHAB/PIK3R2/ANXA1/HSPA1A/PXN
## GO:0044853                                                         SRC/CDH2/IGF1R/MAPK1/MAPK3/CTNNB1/CDH1/MS4A1/CTNNA1/IRS1/CAV1/PTCH1/PTGS2
## GO:0097136                                                                                                  BCL2L11/BAK1/BCL2/BCL2L1/BAX/BAD
##            Count
## GO:0045121    20
## GO:0098857    20
## GO:0005925    23
## GO:0030055    23
## GO:0044853    13
## GO:0097136     6
barplot(ego_MF[[1]], title = "enrichGO, Molecular Function, \n All Selected Genes, Logistic Regression Glmnet")

barplot(ego_MF[[2]], title = "enrichGO, Molecular Function, \n All Selected Genes, Cox Regression Glmnet")

barplot(ego_MF[[3]], title = "enrichGO, Molecular Function, \n All Selected Genes, Squeezy")

barplot(ego_MF[[4]], title = "enrichGO, Molecular Function, \n All Selected Genes, Globaltest")

barplot(ego_MF[[5]], title = "enrichGO, Molecular Function, \n All Selected Genes, FABIA")

barplot(ego_MF[[6]], title = "enrichGO, Molecular Function, \n All Selected Genes, MOFA")

barplot(ego_MF[[7]], title = "enrichGO, Molecular Function, \n All Selected Genes, MFA")

barplot(ego_MF[[8]], title = "enrichGO, Molecular Function, \n All Selected Genes, 20 FABIA Ensemble")

barplot(ego_MF[[9]], title = "enrichGO, Molecular Function, \n All Selected Genes, FABIA & MOFA Ensemble")

barplot(ego_MF[[10]], title = "enrichGO, Molecular Function, \n All Selected Genes, Gaussian Graphical Models")

barplot(ego_MF[[11]], title = "enrichGO, Molecular Function, \n All Genes in ACC Dataset")

barplot(ego_BP[[1]], title = "enrichGO, Biological Process, \n All Selected Genes, Logistic Regression Glmnet")

barplot(ego_BP[[2]], title = "enrichGO, Biological Process, \n All Selected Genes, Cox Regression Glmnet")

barplot(ego_BP[[3]], title = "enrichGO, Biological Process, \n All Selected Genes, Squeezy")

barplot(ego_BP[[4]], title = "enrichGO, Biological Process, \n All Selected Genes, Globaltest")

barplot(ego_BP[[5]], title = "enrichGO, Biological Process, \n All Selected Genes, FABIA")

barplot(ego_BP[[6]], title = "enrichGO, Biological Process, \n All Selected Genes, MOFA")

barplot(ego_BP[[7]], title = "enrichGO, Biological Process, \n All Selected Genes, MFA")

barplot(ego_BP[[8]], title = "enrichGO, Biological Process, \n All Selected Genes, 20 FABIA Ensemble")

barplot(ego_BP[[9]], title = "enrichGO, Biological Process, \n All Selected Genes, FABIA & MOFA Ensemble")

barplot(ego_BP[[10]], title = "enrichGO, Biological Process, \n All Selected Genes, Gaussian Graphical Models")

barplot(ego_BP[[11]], title = "enrichGO, Biological Process, \n All Genes in ACC Dataset")

barplot(ego_CC[[1]], title = "enrichGO, Cellular Component, \n All Selected Genes, Logistic Regression Glmnet")

barplot(ego_CC[[2]], title = "enrichGO, Cellular Component, \n All Selected Genes, Cox Regression Glmnet")

barplot(ego_CC[[3]], title = "enrichGO, Cellular Component, \n All Selected Genes, Squeezy")

barplot(ego_CC[[4]], title = "enrichGO, Cellular Component, \n All Selected Genes, Globaltest")

barplot(ego_CC[[5]], title = "enrichGO, Cellular Component, \n All Selected Genes, FABIA")

barplot(ego_CC[[6]], title = "enrichGO, Cellular Component, \n All Selected Genes, MOFA")

barplot(ego_CC[[7]], title = "enrichGO, Cellular Component, \n All Selected Genes, MFA")

barplot(ego_CC[[8]], title = "enrichGO, Cellular Component, \n All Selected Genes, 20 FABIA Ensemble")

barplot(ego_CC[[9]], title = "enrichGO, Cellular Component, \n All Selected Genes, FABIA & MOFA Ensemble")

barplot(ego_CC[[10]], title = "enrichGO, Cellular Component, \n All Selected Genes, Gaussian Graphical Models")

barplot(ego_CC[[11]], title = "enrichGO, Cellular Component, \n All Genes in ACC Dataset")

DAG plots for ego

goplot(ego_MF[[1]]) + labs(title = "enrichGO, Molecular Function, \n All Selected Genes, Logistic Regression Glmnet")

goplot(ego_MF[[2]]) + labs(title = "enrichGO, Molecular Function, \n All Selected Genes, Cox Regression Glmnet")

goplot(ego_MF[[3]]) + labs(title = "enrichGO, Molecular Function, \n All Selected Genes, Squeezy")

goplot(ego_MF[[4]]) + labs(title = "enrichGO, Molecular Function, \n All Selected Genes, Globaltest")

goplot(ego_MF[[5]]) + labs(title = "enrichGO, Molecular Function, \n All Selected Genes, FABIA")

goplot(ego_MF[[6]]) + labs(title = "enrichGO, Molecular Function, \n All Selected Genes, MOFA")

goplot(ego_MF[[7]]) + labs(title = "enrichGO, Molecular Function, \n All Selected Genes, MFA")

goplot(ego_MF[[8]]) + labs(title = "enrichGO, Molecular Function, \n All Selected Genes, 20 FABIA Ensemble")

goplot(ego_MF[[9]]) + labs(title = "enrichGO, Molecular Function, \n All Selected Genes, FABIA & MOFA Ensemble")

goplot(ego_MF[[10]]) + labs(title = "enrichGO, Molecular Function, \n All Selected Genes, Gaussian Graphical Models")

goplot(ego_MF[[11]]) + labs(title = "enrichGO, Molecular Function, \n All Genes in ACC Dataset")

goplot(ego_BP[[1]]) + labs(title = "enrichGO, Biological Process, \n All Selected Genes, Logistic Regression Glmnet")

goplot(ego_BP[[2]]) + labs(title = "enrichGO, Biological Process, \n All Selected Genes, Cox Regression Glmnet")
## Warning: ggrepel: 11 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

goplot(ego_BP[[3]]) + labs(title = "enrichGO, Biological Process, \n All Selected Genes, Squeezy")

goplot(ego_BP[[4]]) + labs(title = "enrichGO, Biological Process, \n All Selected Genes, Globaltest")

goplot(ego_BP[[5]]) + labs(title = "enrichGO, Biological Process, \n All Selected Genes, FABIA")

goplot(ego_BP[[6]]) + labs(title = "enrichGO, Biological Process, \n All Selected Genes, MOFA")

goplot(ego_BP[[7]]) + labs(title = "enrichGO, Biological Process, \n All Selected Genes, MFA")

goplot(ego_BP[[8]]) + labs(title = "enrichGO, Biological Process, \n All Selected Genes, 20 FABIA Ensemble")

goplot(ego_BP[[9]]) + labs(title = "enrichGO, Biological Process, \n All Selected Genes, FABIA & MOFA Ensemble")

goplot(ego_BP[[10]]) + labs(title = "enrichGO, Biological Process, \n All Selected Genes, Gaussian Graphical Models")

goplot(ego_BP[[11]]) + labs(title = "enrichGO, Biological Process, \n All Genes in ACC Dataset")

goplot(ego_CC[[1]]) + labs(title = "enrichGO, Cellular Component, \n All Selected Genes, Logistic Regression Glmnet")

goplot(ego_CC[[2]]) + labs(title = "enrichGO, Cellular Component, \n All Selected Genes, Cox Regression Glmnet")

goplot(ego_CC[[3]]) + labs(title = "enrichGO, Cellular Component, \n All Selected Genes, Squeezy")

goplot(ego_CC[[4]]) + labs(title = "enrichGO, Cellular Component, \n All Selected Genes, Globaltest")

goplot(ego_CC[[5]]) + labs(title = "enrichGO, Cellular Component, \n All Selected Genes, FABIA")

goplot(ego_CC[[6]]) + labs(title = "enrichGO, Cellular Component, \n All Selected Genes, MOFA")

goplot(ego_CC[[7]]) + labs(title = "enrichGO, Cellular Component, \n All Selected Genes, MFA")

goplot(ego_CC[[8]]) + labs(title = "enrichGO, Cellular Component, \n All Selected Genes, 20 FABIA Ensemble")

goplot(ego_CC[[9]]) + labs(title = "enrichGO, Cellular Component, \n All Selected Genes, FABIA & MOFA Ensemble")

goplot(ego_CC[[10]]) + labs(title = "enrichGO, Cellular Component, \n All Selected Genes, Gaussian Graphical Models")

goplot(ego_CC[[11]]) + labs(title = "enrichGO, Cellular Component, \n All Genes in ACC Dataset")

3. Export Pathway Analysis result to data

pathway = list("ggo_MF" = ggo_MF,
               "ggo_BP" = ggo_BP,
               "ggo_CC" = ggo_CC,
               "ego_MF" = ego_MF,
               "ego_BP" = ego_BP,
               "ego_CC" = ego_CC)

saveRDS(pathway, file = "data/out_pathway/pathways_methods_merged.rds")